Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq54088 104 2e-17 seq51722 104 2e-17 seq52966 86.0 5e-12 >seq54088 Length=1574 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||| || || || ||| || || || |||||||| || |||||| Sbjct 200 GTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCA 259 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || ||||||||||| ||||| || |||||||| ||| ||| || || Sbjct 260 GCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTC 319 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| ||| || || | ||| | ||| || || |||| ||| Sbjct 320 ACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTC 379 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 380 TTGACAAAAATTTGCAT 396 >seq51722 Length=1631 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||| || || || ||| || || || |||||||| || |||||| Sbjct 198 GTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCA 257 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || ||||||||||| ||||| || |||||||| ||| ||| || || Sbjct 258 GCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTC 317 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| ||| || || | ||| | ||| || || |||| ||| Sbjct 318 ACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTC 377 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 378 TTGACAAAAATTTGCAT 394 >seq52966 Length=1601 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| ||||| ||||| || ||||| || ||||| |||||| || || Sbjct 1123 CCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCC 1064 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||| | ||||||| ||||||||||| ||| | || || || || ||| Sbjct 1063 TTCACATTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGA 1004 Query 118719 GTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| Sbjct 1003 GTTTTCACAAAGATTTGCAT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432945780498520