Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11829 98.7 1e-15 seq63457 91.5 2e-13 seq23785 91.5 2e-13 seq117009 89.7 6e-13 seq34166 89.7 6e-13 seq3534 89.7 6e-13 seq90371 86.0 7e-12 >seq11829 Length=4251 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||||||| | Sbjct 2972 ATGCAAAACGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 2913 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 2912 TACTCACCACTATACTACCGAGGA 2889 >seq63457 Length=1378 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||||| ||||| |||||| |||| |||||| ||| || |||||||| ||||||| || Sbjct 1152 TTTAT-AAAAACCTTCTCCCCGGCCGGGAATTGAAGCCGGGTCTCCCATGTGACAGACGC 1094 Query 60111 ACATACTCACCACTATACTACCGAGGATTG 60140 ||||||||||||||||||||||||| || Sbjct 1093 GGATACTCACCACTATACTACCGAGGACTG 1064 >seq23785 Length=2834 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| ||||||| |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 984 ATGCAAAATTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 926 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 925 TACTCACCACTATACTACCGAGGAT 901 >seq117009 Length=781 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||||| Sbjct 209 AAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTC 268 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 269 ACCACTATACTACCGAGGA 287 >seq34166 Length=2224 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 1824 ATGCAAAAGGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 1765 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 1764 TACTCACCACTATACTACCGAGGA 1741 >seq3534 Length=7427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 2696 ATGCAAAAGTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 2754 Query 60114 TACTCACCACTATACTACCGAGGATTGAA 60142 |||||||||||||||||||||||| |||| Sbjct 2755 TACTCACCACTATACTACCGAGGAGTGAA 2783 >seq90371 Length=1002 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 538 ATGCAAAAGTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 596 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 597 TACTCACCACTATACTACCGAGGA 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570621714966800