Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq11829 98.7 1e-15
seq63457 91.5 2e-13
seq23785 91.5 2e-13
seq117009 89.7 6e-13
seq34166 89.7 6e-13
seq3534 89.7 6e-13
seq90371 86.0 7e-12
>seq11829
Length=4251
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
||| |||| |||||| |||| |||||| |||||| |||||| | ||||||||||| |
Sbjct 2972 ATGCAAAACGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 2913
Query 60114 TACTCACCACTATACTACCGAGGA 60137
||||||||||||||||||||||||
Sbjct 2912 TACTCACCACTATACTACCGAGGA 2889
>seq63457
Length=1378
Score = 91.5 bits (100), Expect = 2e-13
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110
||||| ||||| |||||| |||| |||||| ||| || |||||||| ||||||| ||
Sbjct 1152 TTTAT-AAAAACCTTCTCCCCGGCCGGGAATTGAAGCCGGGTCTCCCATGTGACAGACGC 1094
Query 60111 ACATACTCACCACTATACTACCGAGGATTG 60140
||||||||||||||||||||||||| ||
Sbjct 1093 GGATACTCACCACTATACTACCGAGGACTG 1064
>seq23785
Length=2834
Score = 91.5 bits (100), Expect = 2e-13
Identities = 72/85 (85%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
||| ||||||| |||| |||| |||||| |||||| |||||| | ||||||| || |
Sbjct 984 ATGCAAAATTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 926
Query 60114 TACTCACCACTATACTACCGAGGAT 60138
|||||||||||||||||||||||||
Sbjct 925 TACTCACCACTATACTACCGAGGAT 901
>seq117009
Length=781
Score = 89.7 bits (98), Expect = 6e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118
||| ||||||| |||| |||||| |||||| |||||| | ||||||| || ||||||
Sbjct 209 AAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTC 268
Query 60119 ACCACTATACTACCGAGGA 60137
|||||||||||||||||||
Sbjct 269 ACCACTATACTACCGAGGA 287
>seq34166
Length=2224
Score = 89.7 bits (98), Expect = 6e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || |
Sbjct 1824 ATGCAAAAGGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 1765
Query 60114 TACTCACCACTATACTACCGAGGA 60137
||||||||||||||||||||||||
Sbjct 1764 TACTCACCACTATACTACCGAGGA 1741
>seq3534
Length=7427
Score = 89.7 bits (98), Expect = 6e-13
Identities = 74/89 (83%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || |
Sbjct 2696 ATGCAAAAGTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 2754
Query 60114 TACTCACCACTATACTACCGAGGATTGAA 60142
|||||||||||||||||||||||| ||||
Sbjct 2755 TACTCACCACTATACTACCGAGGAGTGAA 2783
>seq90371
Length=1002
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || |
Sbjct 538 ATGCAAAAGTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 596
Query 60114 TACTCACCACTATACTACCGAGGA 60137
||||||||||||||||||||||||
Sbjct 597 TACTCACCACTATACTACCGAGGA 620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570621714966800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |