Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq12184 87.8 2e-12 seq7225 82.4 7e-11 >seq12184 Length=4180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298 ||| ||||| ||||| |||||||||||||| | |||||||| || | ||| ||||| Sbjct 1680 AATTAGTTCATTTGAGTGAGTTAATCCTGGCATGAGACCTCGTTTCTTCAGCCAGAATAT 1739 Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 |||||||||||| | | ||||||||| || ||||| Sbjct 1740 TGCAGCGAATGAGGCAGGAAAGAATATGCCTTCAAC 1775 >seq7225 Length=5421 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || ||||| ||| |||||||||||| || ||||||||||| || || |||||| Sbjct 729 ATGTAGGTTTCAATCAGTTTGCTATACATTTCTGAATGTATGTTTTCAATGGCAATCTGA 788 Query 14534 AAACCATAAAAACATCTAGCTTC 14556 || |||||||| | | |||||| Sbjct 789 AAGCCATAAAAGAAGCGAGCTTC 811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481336834470800