Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq48601 95.1 1e-14 seq30843 87.8 2e-12 seq133353 86.0 6e-12 seq75105 86.0 6e-12 seq7225 82.4 7e-11 >seq48601 Length=1711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || ||||| ||||| || |||||| | || || ||| | || Sbjct 102 ATGCAAATTTTCGTCAAAACACTGACTGGCAAGACCATCACCCTGGAGGTCGAAGCCTCA 161 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| ||||||||||||| | ||||| |||||| Sbjct 162 GACACCATCGAAAACGTAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCGCCAGACCAG 221 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || || || || ||||| || Sbjct 222 CAACGCCTTATCTTCGCCGG 241 >seq30843 Length=2387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || |||||||| ||||| || || | ||| || || ||||| | || || || || ||| Sbjct 1843 TCAGCATGCCATGGCTCAAGATAGATGGCGAAAGCTCCCGGGCGTTTGTTACCACCTTGA 1784 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || ||||| ||||| |||||||||||||| | ||||| || || ||||| || || Sbjct 1783 TCAACGTAGCGGGCTGTGTTGTTGTACACACGAAGCATAGGAACCAGACCATTTGA 1728 >seq133353 Length=689 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||||||||| || || || ||||| | || |||||| ||||| Sbjct 398 ATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTCC 339 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||| ||||||||| | || || || ||| Sbjct 338 GACACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCAG 279 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || || ||||| Sbjct 278 CAGCGACTTATCTTTGCTGG 259 >seq75105 Length=1195 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||||||||| || || || ||||| | || |||||| ||||| Sbjct 293 ATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTCC 352 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||| ||||||||| | || || || ||| Sbjct 353 GACACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCAG 412 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || || ||||| Sbjct 413 CAGCGACTTATCTTTGCTGG 432 >seq7225 Length=5421 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 57741 GAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800 ||| | ||||| |||||||||||||| | || || | | |||||| || ||||| | Sbjct 841 GAACGCTTTTCTCAAGAAGTGCAAGTACCTGAAGCTCGCTTCTTTTATGGCTTTCAGATT 782 Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTAT 57830 |||||||||||| | ||||||||||||||| Sbjct 781 GCCATTGAAAACATACATTCAGAAATGTAT 752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444834135295200