Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq30843 84.2 3e-11 seq7225 82.4 1e-10 >seq30843 Length=2387 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 64038 TTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTG 64097 ||||||| || || | ||||| || || |||||||| |||||||| ||||| | Sbjct 900 TTTGATACAGCAATACGAGCGGCGAGGATAGCATAATCAGGATGTTGAGTAGTCATTGAT 841 Query 64098 GCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCT 64157 || || |||| || |||| ||||||||||||| |||| || || || || | |||| Sbjct 840 GCAGCAGTTTCTGCAGCCAAGTTGTCCAATTCTACTGTTGAAACACCTTTGTACAATCCT 781 Query 64158 TGAATAACCTTCATAGCTA 64176 ||| || |||||||||| Sbjct 780 CCAATTACTTTCATAGCTA 762 >seq7225 Length=5421 Score = 82.4 bits (90), Expect = 1e-10 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||||||||| ||||| |||||||||||||| |||||||| || || || | | ||| Sbjct 750 CTATACATTTCTGAATGTATGTTTTCAATGGCAATCTGAAAGCCATAAAAGAAGCGAGCT 809 Query 33930 TC-GGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || |||| | ||||||||| | |||| |||||| Sbjct 810 TCAGGTACT-TGCACTTCTTGAGAAAAGCGTTCT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628500415216800