Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq7225 87.8 2e-12
seq12184 84.2 2e-11
>seq7225
Length=5421
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201
||||| || ||||| ||| |||||||||||| || ||||||||||| || || ||||||
Sbjct 729 ATGTAGGTTTCAATCAGTTTGCTATACATTTCTGAATGTATGTTTTCAATGGCAATCTGA 788
Query 14202 AAACCATAAAAGCATCTAGCTTC 14224
|| ||||||||| | | ||||||
Sbjct 789 AAGCCATAAAAGAAGCGAGCTTC 811
>seq12184
Length=4180
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13907 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966
||| ||||| ||||| |||||||||||||| | |||||||| || | ||| |||||
Sbjct 1680 AATTAGTTCATTTGAGTGAGTTAATCCTGGCATGAGACCTCGTTTCTTCAGCCAGAATAT 1739
Query 13967 TGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002
|||||| ||||| | | ||||||||| || |||||
Sbjct 1740 TGCAGCGAATGAGGCAGGAAAGAATATGCCTTCAAC 1775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478724708854000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |