Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7225 87.8 2e-12 seq12184 84.2 2e-11 >seq7225 Length=5421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| ||| |||||||||||| || ||||||||||| || || |||||| Sbjct 729 ATGTAGGTTTCAATCAGTTTGCTATACATTTCTGAATGTATGTTTTCAATGGCAATCTGA 788 Query 14202 AAACCATAAAAGCATCTAGCTTC 14224 || ||||||||| | | |||||| Sbjct 789 AAGCCATAAAAGAAGCGAGCTTC 811 >seq12184 Length=4180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13907 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966 ||| ||||| ||||| |||||||||||||| | |||||||| || | ||| ||||| Sbjct 1680 AATTAGTTCATTTGAGTGAGTTAATCCTGGCATGAGACCTCGTTTCTTCAGCCAGAATAT 1739 Query 13967 TGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 |||||| ||||| | | ||||||||| || ||||| Sbjct 1740 TGCAGCGAATGAGGCAGGAAAGAATATGCCTTCAAC 1775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478724708854000