Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 96.9 3e-15
seq51722 96.9 3e-15
>seq54088
Length=1574
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | ||| || |||||||||||||| |||| || | ||| || || |||||
Sbjct 205 CTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAA 264
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037
|||| |||||| ||||| | || | || || || || ||| | || || |
Sbjct 265 GATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATT 324
Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
||| ||||| ||||| || || | ||||| || ||||| || | ||| || ||
Sbjct 325 CTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGAC 384
Query 43098 AAAAATTTGCATT 43110
|||||||||||||
Sbjct 385 AAAAATTTGCATT 397
>seq51722
Length=1631
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | ||| || |||||||||||||| |||| || | ||| || || |||||
Sbjct 203 CTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAA 262
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037
|||| |||||| ||||| | || | || || || || ||| | || || |
Sbjct 263 GATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATT 322
Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
||| ||||| ||||| || || | ||||| || ||||| || | ||| || ||
Sbjct 323 CTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGAC 382
Query 43098 AAAAATTTGCATT 43110
|||||||||||||
Sbjct 383 AAAAATTTGCATT 395
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 42970 CCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCT 43029
|| ||||||||||||| |||||||| | || | |||||||| || |||| ||
Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906
Query 43030 TTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGA 43089
||||| | ||| |||||| ||||| || || | || || |||||||| || |||
Sbjct 907 TTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGA 966
Query 43090 GTTTTCACAAAAATTTGCATT 43110
|| |||||||| || ||||||
Sbjct 967 GTCTTCACAAAGATCTGCATT 987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380591952823980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |