Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq51722 111 1e-19
seq75105 93.3 4e-14
seq150301 89.7 5e-13
seq52966 84.2 2e-11
>seq51722
Length=1631
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||| || |||||||| |||||||||||||| |||||||| || | || || || ||||
Sbjct 851 CAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCTTTGA 910
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| | | ||||||| || || || | ||||| ||||||||||||||||| |
Sbjct 911 CGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGAGTCT 970
Query 94992 TCACAAAGATCTGCAT 95007
||||||||||||||||
Sbjct 971 TCACAAAGATCTGCAT 986
>seq75105
Length=1195
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
||| ||| ||||||| | || ||||||||||| ||||| ||||| ||||| | || ||
Sbjct 740 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 681
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||| || || | | |||||| | || || |||| |||||||| ||||||||
Sbjct 680 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGT 621
Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||||||||| |||||
Sbjct 620 CAGCGTCTTCACAAAGATTTGCAT 597
>seq150301
Length=587
Score = 89.7 bits (98), Expect = 5e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||| || |||| || ||||| || || || ||||| ||||| | ||||||||| || |
Sbjct 511 CAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCTTTCA 452
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| | | || || | | || || |||| ||||| || ||||||||||| ||||
Sbjct 451 CATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGCGTTT 392
Query 94992 TCACAAAGATCTGCATGCT 95010
| |||||||||||||||||
Sbjct 391 TTACAAAGATCTGCATGCT 373
>seq52966
Length=1601
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| | | |||||| |||||||||||||| |||||||| | || || ||||| ||
Sbjct 1117 AAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACA 1058
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
| | |||||| | ||||| || | || || || || || ||||||||||||
Sbjct 1057 TTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGAGTTTTC 998
Query 94994 ACAAAGATCTGCAT 95007
|||||||| |||||
Sbjct 997 ACAAAGATTTGCAT 984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447353654991600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |