Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq25551 208 1e-49
seq7204 203 5e-48
seq18078 192 9e-45
seq91490 185 1e-42
seq53050 149 1e-31
seq24510 149 1e-31
seq4748 141 1e-29
seq119681 127 3e-25
seq12050 114 2e-21
>seq25551
Length=2703
Score = 208 bits (230), Expect = 1e-49
Identities = 208/270 (77%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || | | | |||||| |||||||||||||| ||||| || || |||||
Sbjct 910 GCTAAGCGCCACAGAAAAGTTCTTCGTGATAACATCCAAGGTATCACGAAACCTGCTATT 969
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| ||||||| |||||||| || |||||| | ||||| | ||||||| || | |
Sbjct 970 CGTCGTTTGGCTCGACGTGGTGGTGTGAAGCGTATTTCTGGTCTAATCTATGAGGAAACT 1029
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| |||| | || ||| | | ||||| | ||||||| || |||| |||
Sbjct 1030 CGTGGTGTGCTGAAAGTGTTTCTCGAAAATGTTATTCGTGATGCTGTCACCTATTGCGAA 1089
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||||||||||||||| ||||| |||||||| |||||||||| | |||||||| ||
Sbjct 1090 CACGCTAAACGTAAGACGGTCACTGCCATGGATGTCGTCTATGCTCTTAAACGTCAGGGT 1149
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|||| | | || || |||||| | ||| ||
Sbjct 1150 CGTACGCTCTACGGATTTGGAGGATAAACT 1179
>seq7204
Length=5428
Score = 203 bits (224), Expect = 5e-48
Identities = 205/267 (77%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||||| | |||||| || |||||||| ||||| |||||||| || ||
Sbjct 5068 GCAAAGCGACATCGCAAAGTTCTTCGTGACAACATCCAGGGAATTACCAAGCCGGCCATT 5127
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| || ||||||||||| ||||| |||||| |||| ||| || ||||||| |||| |
Sbjct 5128 CGTCGACTTGCTCGTCGTGGAGGAGTGAAGCGTATCTCCGGACTGATCTATGAGGAGACT 5187
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||||||||| | ||||| ||| || || | || ||| || |||| ||
Sbjct 5188 CGCGGTGTTTTGAAAGTGTTCCTGGAGAATGTGATTCGCGACGCTGTCACCTATTGTGAA 5247
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||||| ||||| ||||| | |||||| |||||||||| ||||||| |||||
Sbjct 5248 CATGCGAAACGAAAGACCGTCACTGCGATGGATGTCGTCTATGCTCTGAAACGCCAAGGA 5307
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || || |||||| |||||
Sbjct 5308 CGTACCCTCTACGGATTTGGAGGTTAA 5334
>seq18078
Length=3342
Score = 192 bits (212), Expect = 9e-45
Identities = 190/246 (77%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||||
Sbjct 1103 CTTCGTGACAACATCCAAGGCATCACGAAGCCAGCCATTCGTCGTCTCGCTCGTCGTGGT 1162
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| ||||| |||| || | |||| || |||| |||| || ||||| | |||
Sbjct 1163 GGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGTGGAGTGCTGAAGGTGTTC 1222
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| ||| || || |||| ||||||||| || | |||||||||
Sbjct 1223 CTCGAGAACGTGATCCGTGACGCCGTCACCTATTGCGAGCACGCCAAGAGAAAGACTGTC 1282
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
||| |||||||| ||||||| || | || || ||||| |||| | |||||||| |||
Sbjct 1283 ACCGCCATGGATGTCGTCTACGCTCTCAAGCGACAAGGACGTACCCTCTATGGTTTCGGA 1342
Query 16694 AGTTAA 16699
| |||
Sbjct 1343 GGATAA 1348
>seq91490
Length=991
Score = 185 bits (204), Expect = 1e-42
Identities = 183/237 (77%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522
||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 3 AACATCCAAGGCATCACGAAGCCAGCCATCCGTCGTCTCGCTCGTCGTGGTGGAGTGAAG 62
Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582
|| ||||||| | |||||||||| | ||| | || |||| | |||||| ||| |
Sbjct 63 CGCATCTCTGGTCTCATCTATGAAGAAACTCGAGGAGTGCTGAAAGTGTTCCTCGAGAAC 122
Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642
|| |||| ||| || || |||| ||||||||||| | ||||| ||||| |||||
Sbjct 123 GTGATCCGTGACGCCGTCACCTATTGTGAGCACGCTAAGAGAAAGACCGTCACTGCCATG 182
Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| |||||||||| | || || ||||| |||| | |||||||| ||| | |||
Sbjct 183 GACGTCGTCTATGCCCTTAAGCGACAAGGACGTACCCTCTATGGTTTCGGAGGATAA 239
>seq53050
Length=1599
Score = 149 bits (164), Expect = 1e-31
Identities = 138/175 (79%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 16455 TTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTG 16514
|||| || ||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 177 TTCGTGACAACATCCAAGGTATCACCAAGCCAGCCATCCGTCGTCTCGCTCGTCGTGGTG 118
Query 16515 GAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCC 16574
|||| ||||| ||||||| || ||||||| |||| |||| || ||||| | ||||
Sbjct 117 GAGTGAAGCGAATCTCTGGCCTGATCTATGAGGAGACCCGTGGAGTGCTGAAGGTGTTCC 58
Query 16575 TCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGAC 16629
|| ||| || |||| ||| || || ||| ||||||||| || | |||||
Sbjct 57 TCGAGAATGTGATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGAC 3
>seq24510
Length=2779
Score = 149 bits (164), Expect = 1e-31
Identities = 184/248 (74%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| || || |||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 2530 CTTCGTGACAATATCCAAGGCATCACAAAGCCAGCCATCCGTCGTCTCGCTCGTCGTGGT 2589
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| ||||| |||| || | | || || |||| |||| || | ||| | |||
Sbjct 2590 GGAGTGAAGCGCATCTCCGGCCTCATTTACGAGGAGACCCGTGGAGTGCTTAAGGTATTC 2649
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CGAGCACGCTAAACGTAAGACTG 16631
|| ||| || |||| ||| || | ||| |||| ||||||||| || | || || |
Sbjct 2650 CTTGAGAATGTGATCCGTGACGCCGT-CAC-ATACTGCGAGCACGCCAAGAGAAAAACCG 2707
Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691
| || ||||||| ||||||| || | ||||| ||||| |||| | |||||||| |
Sbjct 2708 TTACTGCCATGGACGTCGTCTACGCTCTCAAACGCCAAGGACGTACCCTCTATGGTTTCG 2767
Query 16692 GAAGTTAA 16699
|| | |||
Sbjct 2768 GAGGATAA 2775
>seq4748
Length=6524
Score = 141 bits (156), Expect = 1e-29
Identities = 144/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||| | ||||| || ||||||||||| ||||| |||||||||||
Sbjct 544 GCGAAGCGCCATCGGAAGGTGCTTCGTGACAACATCCAAGGCATCACGAAGCCAGCTATA 603
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||||| ||||||||||| ||||| ||||||| | ||||||| |||| |
Sbjct 604 CGTCGTCTTGCTCGGCGTGGTGGAGTGAAGCGCATCTCTGGTCTCATCTATGAGGAGACT 663
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || |||| | |||||| ||| ||| |||| ||| || || ||| ||||
Sbjct 664 CGTGGAGTGCTGAAAGTGTTCCTCGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 723
Query 16613 CACGCTAA 16620
||||| ||
Sbjct 724 CACGCCAA 731
>seq119681
Length=764
Score = 127 bits (140), Expect = 3e-25
Identities = 99/118 (84%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||||| ||||| || ||||||||||| ||||||||||||||||||
Sbjct 28 GCAAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAAGGCATCACCAAGCCAGCTATC 87
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||||| ||||||||||||||||| ||||| ||||||| | ||||||| ||||
Sbjct 88 CGTCGTCTTGCTCGTCGTGGTGGAGTGAAGCGCATCTCTGGTCTCATCTATGAGGAGA 145
>seq12050
Length=4204
Score = 114 bits (126), Expect = 2e-21
Identities = 96/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||||| ||||| || ||||||||||| ||||| |||||||| |||
Sbjct 813 GCGAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAAGGCATCACGAAGCCAGCCATC 754
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||||| ||||||||||||||||| ||||| ||||||| | |||| || ||||
Sbjct 753 CGTCGTCTTGCTCGTCGTGGTGGAGTGAAGCGAATCTCTGGTCTTATCTACGAGGAGA 696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78922227295830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |