Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25551 208 1e-49 seq7204 203 5e-48 seq18078 192 9e-45 seq91490 185 1e-42 seq53050 149 1e-31 seq24510 149 1e-31 seq4748 141 1e-29 seq119681 127 3e-25 seq12050 114 2e-21 >seq25551 Length=2703 Score = 208 bits (230), Expect = 1e-49 Identities = 208/270 (77%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || | | | |||||| |||||||||||||| ||||| || || ||||| Sbjct 910 GCTAAGCGCCACAGAAAAGTTCTTCGTGATAACATCCAAGGTATCACGAAACCTGCTATT 969 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| |||||||| || |||||| | ||||| | ||||||| || | | Sbjct 970 CGTCGTTTGGCTCGACGTGGTGGTGTGAAGCGTATTTCTGGTCTAATCTATGAGGAAACT 1029 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | || ||| | | ||||| | ||||||| || |||| ||| Sbjct 1030 CGTGGTGTGCTGAAAGTGTTTCTCGAAAATGTTATTCGTGATGCTGTCACCTATTGCGAA 1089 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||||||||||| ||||| |||||||| |||||||||| | |||||||| || Sbjct 1090 CACGCTAAACGTAAGACGGTCACTGCCATGGATGTCGTCTATGCTCTTAAACGTCAGGGT 1149 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | | || || |||||| | ||| || Sbjct 1150 CGTACGCTCTACGGATTTGGAGGATAAACT 1179 >seq7204 Length=5428 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || |||||||| ||||| |||||||| || || Sbjct 5068 GCAAAGCGACATCGCAAAGTTCTTCGTGACAACATCCAGGGAATTACCAAGCCGGCCATT 5127 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || ||||||||||| ||||| |||||| |||| ||| || ||||||| |||| | Sbjct 5128 CGTCGACTTGCTCGTCGTGGAGGAGTGAAGCGTATCTCCGGACTGATCTATGAGGAGACT 5187 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||||||||| | ||||| ||| || || | || ||| || |||| || Sbjct 5188 CGCGGTGTTTTGAAAGTGTTCCTGGAGAATGTGATTCGCGACGCTGTCACCTATTGTGAA 5247 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| ||||| ||||| | |||||| |||||||||| ||||||| ||||| Sbjct 5248 CATGCGAAACGAAAGACCGTCACTGCGATGGATGTCGTCTATGCTCTGAAACGCCAAGGA 5307 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || |||||| ||||| Sbjct 5308 CGTACCCTCTACGGATTTGGAGGTTAA 5334 >seq18078 Length=3342 Score = 192 bits (212), Expect = 9e-45 Identities = 190/246 (77%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||||| Sbjct 1103 CTTCGTGACAACATCCAAGGCATCACGAAGCCAGCCATTCGTCGTCTCGCTCGTCGTGGT 1162 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || | |||| || |||| |||| || ||||| | ||| Sbjct 1163 GGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGTGGAGTGCTGAAGGTGTTC 1222 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| || || |||| ||||||||| || | ||||||||| Sbjct 1223 CTCGAGAACGTGATCCGTGACGCCGTCACCTATTGCGAGCACGCCAAGAGAAAGACTGTC 1282 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||| ||||||| || | || || ||||| |||| | |||||||| ||| Sbjct 1283 ACCGCCATGGATGTCGTCTACGCTCTCAAGCGACAAGGACGTACCCTCTATGGTTTCGGA 1342 Query 16694 AGTTAA 16699 | ||| Sbjct 1343 GGATAA 1348 >seq91490 Length=991 Score = 185 bits (204), Expect = 1e-42 Identities = 183/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 3 AACATCCAAGGCATCACGAAGCCAGCCATCCGTCGTCTCGCTCGTCGTGGTGGAGTGAAG 62 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 || ||||||| | |||||||||| | ||| | || |||| | |||||| ||| | Sbjct 63 CGCATCTCTGGTCTCATCTATGAAGAAACTCGAGGAGTGCTGAAAGTGTTCCTCGAGAAC 122 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || |||| ||| || || |||| ||||||||||| | ||||| ||||| ||||| Sbjct 123 GTGATCCGTGACGCCGTCACCTATTGTGAGCACGCTAAGAGAAAGACCGTCACTGCCATG 182 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || |||||||||| | || || ||||| |||| | |||||||| ||| | ||| Sbjct 183 GACGTCGTCTATGCCCTTAAGCGACAAGGACGTACCCTCTATGGTTTCGGAGGATAA 239 >seq53050 Length=1599 Score = 149 bits (164), Expect = 1e-31 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 16455 TTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTG 16514 |||| || ||||||||||| |||||||||||||| ||||||||||| ||||||||||||| Sbjct 177 TTCGTGACAACATCCAAGGTATCACCAAGCCAGCCATCCGTCGTCTCGCTCGTCGTGGTG 118 Query 16515 GAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCC 16574 |||| ||||| ||||||| || ||||||| |||| |||| || ||||| | |||| Sbjct 117 GAGTGAAGCGAATCTCTGGCCTGATCTATGAGGAGACCCGTGGAGTGCTGAAGGTGTTCC 58 Query 16575 TCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGAC 16629 || ||| || |||| ||| || || ||| ||||||||| || | ||||| Sbjct 57 TCGAGAATGTGATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGAC 3 >seq24510 Length=2779 Score = 149 bits (164), Expect = 1e-31 Identities = 184/248 (74%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || || |||||||| ||||| |||||||| ||||||||||| |||||||||||| Sbjct 2530 CTTCGTGACAATATCCAAGGCATCACAAAGCCAGCCATCCGTCGTCTCGCTCGTCGTGGT 2589 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || | | || || |||| |||| || | ||| | ||| Sbjct 2590 GGAGTGAAGCGCATCTCCGGCCTCATTTACGAGGAGACCCGTGGAGTGCTTAAGGTATTC 2649 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CGAGCACGCTAAACGTAAGACTG 16631 || ||| || |||| ||| || | ||| |||| ||||||||| || | || || | Sbjct 2650 CTTGAGAATGTGATCCGTGACGCCGT-CAC-ATACTGCGAGCACGCCAAGAGAAAAACCG 2707 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 | || ||||||| ||||||| || | ||||| ||||| |||| | |||||||| | Sbjct 2708 TTACTGCCATGGACGTCGTCTACGCTCTCAAACGCCAAGGACGTACCCTCTATGGTTTCG 2767 Query 16692 GAAGTTAA 16699 || | ||| Sbjct 2768 GAGGATAA 2775 >seq4748 Length=6524 Score = 141 bits (156), Expect = 1e-29 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | ||||| || ||||||||||| ||||| ||||||||||| Sbjct 544 GCGAAGCGCCATCGGAAGGTGCTTCGTGACAACATCCAAGGCATCACGAAGCCAGCTATA 603 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| ||||||||||| ||||| ||||||| | ||||||| |||| | Sbjct 604 CGTCGTCTTGCTCGGCGTGGTGGAGTGAAGCGCATCTCTGGTCTCATCTATGAGGAGACT 663 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||| | |||||| ||| ||| |||| ||| || || ||| |||| Sbjct 664 CGTGGAGTGCTGAAAGTGTTCCTCGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 723 Query 16613 CACGCTAA 16620 ||||| || Sbjct 724 CACGCCAA 731 >seq119681 Length=764 Score = 127 bits (140), Expect = 3e-25 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||||| || ||||||||||| |||||||||||||||||| Sbjct 28 GCAAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAAGGCATCACCAAGCCAGCTATC 87 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||| ||||||||||||||||| ||||| ||||||| | ||||||| |||| Sbjct 88 CGTCGTCTTGCTCGTCGTGGTGGAGTGAAGCGCATCTCTGGTCTCATCTATGAGGAGA 145 >seq12050 Length=4204 Score = 114 bits (126), Expect = 2e-21 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||||| || ||||||||||| ||||| |||||||| ||| Sbjct 813 GCGAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAAGGCATCACGAAGCCAGCCATC 754 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||| ||||||||||||||||| ||||| ||||||| | |||| || |||| Sbjct 753 CGTCGTCTTGCTCGTCGTGGTGGAGTGAAGCGAATCTCTGGTCTTATCTACGAGGAGA 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78922227295830