Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq54088 91.5 1e-13 seq51722 91.5 1e-13 >seq54088 Length=1574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 ||||||| || || | || || | || ||||| ||||||||||| || || ||||||| Sbjct 168 ACCCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGG 227 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 || || ||||||| | ||| || || ||| | || || ||||| || || || Sbjct 228 ACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAG 287 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | ||||| || || ||| | |||||| | | | |||||| | ||| Sbjct 288 GAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTA 347 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||| || || ||||| |||| || ||||||||||| |||||| Sbjct 348 CTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397 >seq51722 Length=1631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 ||||||| || || | || || | || ||||| ||||||||||| || || ||||||| Sbjct 166 ACCCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGG 225 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 || || ||||||| | ||| || || ||| | || || ||||| || || || Sbjct 226 ACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAG 285 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | ||||| || || ||| | |||||| | | | |||||| | ||| Sbjct 286 GAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTA 345 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||| || || ||||| |||| || ||||||||||| |||||| Sbjct 346 CTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404261988856900