Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11489 109 4e-19 seq61170 102 5e-17 seq22965 89.7 3e-13 seq89965 87.8 1e-12 seq75105 82.4 5e-11 seq48601 82.4 5e-11 seq492 82.4 5e-11 >seq11489 Length=4315 Score = 109 bits (120), Expect = 4e-19 Identities = 86/103 (83%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 25894 TTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGT 25948 ||| || |||||||||||||||||||||||||||||||||||||| |||| | Sbjct 645 TTTTTACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTCAGGGACAGTAGA 586 Query 25949 AATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||| ||||| ||||||||||||| || |||| |||||| Sbjct 585 AATCTCGTCAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 543 >seq61170 Length=1422 Score = 102 bits (112), Expect = 5e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || || ||||| |||||| | ||||| ||||| | | |||| ||||||||| Sbjct 761 CCTACCAAGTACTTCGGTTGCGAATTGGGCGCACAGACCAACTATGATGCGAAAAACGAG 702 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | |||||| || ||| |||| || |||| ||| |||||||| | || || ||||| Sbjct 701 CGTTACATCGTGAATGGAGAGCATGACGCTGCGAAGTTGCAGGACATCCTCGATGGCTTC 642 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || | || ||||| || || | | ||||| ||||| ||||| Sbjct 641 ATCAGGAAATTTGTACTATGCCCCGCTTGCGAGAACCCAGAGAC 598 >seq22965 Length=2896 Score = 89.7 bits (98), Expect = 3e-13 Identities = 61/69 (88%), Gaps = 5/69 (7%) Strand=Plus/Plus Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCA 25967 ||||||||||||||||||||||||||| ||||| || |||||||||||||| |||| Sbjct 1 CTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCA 60 Query 25968 TGCGCGTCA 25976 ||||||||| Sbjct 61 TGCGCGTCA 69 >seq89965 Length=1007 Score = 87.8 bits (96), Expect = 1e-12 Identities = 60/68 (88%), Gaps = 5/68 (7%) Strand=Plus/Minus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968 |||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| Sbjct 1007 TTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCAT 948 Query 25969 GCGCGTCA 25976 |||||||| Sbjct 947 GCGCGTCA 940 >seq75105 Length=1195 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 ||||| || || || | ||||| |||| ||| | |||||| |||||| || || Sbjct 1055 CCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 996 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 |||||||||| | ||||| | ||||| || || || || ||||| || ||||| Sbjct 995 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 936 Query 38298 GTTTTCACGAATATCTGCAT 38317 ||||||||||| |||||||| Sbjct 935 GTTTTCACGAAAATCTGCAT 916 >seq48601 Length=1711 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||| ||||| | |||| ||||| || ||| ||| || Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || |||| || || || | ||||||||| || || || || || || ||| Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || ||||||||||| |||||||| Sbjct 904 AACGTTTTCACGAAGATCTGCAT 882 >seq492 Length=15264 Score = 82.4 bits (90), Expect = 5e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||| ||||||| ||||||||| |||| ||||||||| | ||||| |||| Sbjct 5665 CTCTCTCTTCAAGGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTG-TATCGAATTCGC 5723 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 5724 GTCTATATTTAGCCTTA 5740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334264212304610