Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq11489 109 4e-19
seq61170 102 5e-17
seq22965 89.7 3e-13
seq89965 87.8 1e-12
seq75105 82.4 5e-11
seq48601 82.4 5e-11
seq492 82.4 5e-11
>seq11489
Length=4315
Score = 109 bits (120), Expect = 4e-19
Identities = 86/103 (83%), Gaps = 5/103 (5%)
Strand=Plus/Minus
Query 25894 TTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGT 25948
||| || |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 645 TTTTTACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTCAGGGACAGTAGA 586
Query 25949 AATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||||| ||||| ||||||||||||| || |||| ||||||
Sbjct 585 AATCTCGTCAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 543
>seq61170
Length=1422
Score = 102 bits (112), Expect = 5e-17
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
|| || || || ||||| |||||| | ||||| ||||| | | |||| |||||||||
Sbjct 761 CCTACCAAGTACTTCGGTTGCGAATTGGGCGCACAGACCAACTATGATGCGAAAAACGAG 702
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|| | |||||| || ||| |||| || |||| ||| |||||||| | || || |||||
Sbjct 701 CGTTACATCGTGAATGGAGAGCATGACGCTGCGAAGTTGCAGGACATCCTCGATGGCTTC 642
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
|| | || ||||| || || | | ||||| ||||| |||||
Sbjct 641 ATCAGGAAATTTGTACTATGCCCCGCTTGCGAGAACCCAGAGAC 598
>seq22965
Length=2896
Score = 89.7 bits (98), Expect = 3e-13
Identities = 61/69 (88%), Gaps = 5/69 (7%)
Strand=Plus/Plus
Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCA 25967
||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 1 CTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCA 60
Query 25968 TGCGCGTCA 25976
|||||||||
Sbjct 61 TGCGCGTCA 69
>seq89965
Length=1007
Score = 87.8 bits (96), Expect = 1e-12
Identities = 60/68 (88%), Gaps = 5/68 (7%)
Strand=Plus/Minus
Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968
|||||||||||||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 1007 TTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCAT 948
Query 25969 GCGCGTCA 25976
||||||||
Sbjct 947 GCGCGTCA 940
>seq75105
Length=1195
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
||||| || || || | ||||| |||| ||| | |||||| |||||| || ||
Sbjct 1055 CCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 996
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|||||||||| | ||||| | ||||| || || || || ||||| || |||||
Sbjct 995 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 936
Query 38298 GTTTTCACGAATATCTGCAT 38317
||||||||||| ||||||||
Sbjct 935 GTTTTCACGAAAATCTGCAT 916
>seq48601
Length=1711
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||| ||||| | |||| ||||| || ||| ||| ||
Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||| || |||| || || || | ||||||||| || || || || || || |||
Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
|| ||||||||||| ||||||||
Sbjct 904 AACGTTTTCACGAAGATCTGCAT 882
>seq492
Length=15264
Score = 82.4 bits (90), Expect = 5e-11
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||| ||||||| ||||||||| |||| ||||||||| | ||||| ||||
Sbjct 5665 CTCTCTCTTCAAGGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTG-TATCGAATTCGC 5723
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||||||
Sbjct 5724 GTCTATATTTAGCCTTA 5740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334264212304610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |