Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq54088 111 1e-19 seq51722 111 1e-19 seq75105 102 7e-17 seq150799 82.4 7e-11 seq48601 82.4 7e-11 >seq54088 Length=1574 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||||||||| || || | || || | ||||| ||| |||| Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| ||| |||| || || | ||| || || || || ||||| ||||| | Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCA-AGATAAGGAGGGAATTCCTCCTGATC 279 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| || || ||| | || || | ||| || || ||| || | Sbjct 278 AGCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATA 219 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| ||||| || || ||||| || Sbjct 218 ATATCCAAAAGGAGTCAACGCTTCA 194 >seq51722 Length=1631 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||||||||| || || | || || | ||||| ||| |||| Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| ||| |||| || || | ||| || || || || ||||| ||||| | Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCA-AGATAAGGAGGGAATTCCTCCTGATC 277 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| || || ||| | || || | ||| || || ||| || | Sbjct 276 AGCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATA 217 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| ||||| || || ||||| || Sbjct 216 ATATCCAAAAGGAGTCAACGCTTCA 192 >seq75105 Length=1195 Score = 102 bits (112), Expect = 7e-17 Identities = 113/148 (76%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| |||| || || ||||||| | ||||||||| | || Sbjct 596 AATGCAAATCTTTGTGAAGACGCTGACTGGAAAGACCATCACTCTTGAAGTGGAGGCTTC 655 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| ||| | || ||||||| | || ||||| |||||||||||||| || Sbjct 656 GGACACTATTGAG--AATGTAAAAGCAAAGATCCAA-GACAAGGAAGGGATTCCACCAGA 712 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAA 25142 || ||| || | || |||||||| ||| Sbjct 713 TCAGCAGAGGCTCATCTTTGCCGGTAAA 740 >seq150799 Length=584 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/132 (75%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 25014 AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCA 25073 ||||| |||| || || ||||||| | ||||||||| | || |||||||| ||| | Sbjct 1 AAGACGCTGACTGGAAAGACCATCACCCTTGAAGTGGAGGCTTCGGACACTATTGAG--A 58 Query 25074 CTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATT 25130 || ||||||| | || ||||| |||||||||||||| || || ||| || | || Sbjct 59 ATGTAAAAGCAAAGATCCAA-GACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTCATC 117 Query 25131 TTTGCCGGCAAA 25142 |||||||| ||| Sbjct 118 TTTGCCGGTAAA 129 >seq48601 Length=1711 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||| || || | |||||| ||||||| ||| | || Sbjct 397 AATGCAGATCTTCGTGAAGACGTTGACAGGAAAGACTATCACACTCGAAGTCGAGGCTTC 456 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| | || |||| || | ||| ||||| || || ||||||||||| Sbjct 457 AGATACAATCGAA--AATGTAAAAGCTAAGATTCAA-GACAAGGAGGGTATTCCACCTGA 513 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAA 25141 || || || |||| |||||||| || Sbjct 514 TCAGCAACGACTTATCTTTGCCGGTAA 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432444404937650