Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 145 1e-29
seq51722 145 1e-29
seq75105 120 6e-22
seq48601 120 6e-22
seq150799 114 2e-20
seq133353 111 3e-19
>seq54088
Length=1574
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| ||||| || | || | ||| ||||| ||||| |||||||| ||||| |||||
Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 229
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | || || || | ||||| || || || || |||| || || || || |||
Sbjct 230 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 289
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| ||||| || ||| || ||||| | | ||||||
Sbjct 290 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 349
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||| ||| || || ||||| || | |||||||| || || ||||||
Sbjct 350 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/144 (74%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || |||| ||||| || |||||||| ||||||||||| || || ||
Sbjct 539 TTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTTG 598
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || ||| ||||| ||||| | || ||| || || | || || || | || |||
Sbjct 599 GCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGTG 658
Query 68439 AGGGTCTTGACGAATATCTGCATT 68462
|| ||||| ||||| ||||||||
Sbjct 659 AGAGTCTTAACGAA-GTCTGCATT 681
>seq51722
Length=1631
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| ||||| || | || | ||| ||||| ||||| |||||||| ||||| |||||
Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 227
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | || || || | ||||| || || || || |||| || || || || |||
Sbjct 228 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 287
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| ||||| || ||| || ||||| | | ||||||
Sbjct 288 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 347
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||| ||| || || ||||| || | |||||||| || || ||||||
Sbjct 348 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || ||||| || |||| || ||||| || || || || ||||| |||||||| ||
Sbjct 1142 CTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTT 1201
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||||| || || || || || | || ||| ||||| | ||| || ||||| || ||
Sbjct 1202 TGCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGT 1261
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
||| |||||||||||||| ||||||
Sbjct 1262 GAGAGTCTTGACGAATATTTGCATT 1286
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
||||| || || | || || || || || ||||| || ||||| || || || || ||
Sbjct 1490 CCGGCAAAGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCT 1549
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|||||| ||| || ||||| | || ||| ||||| | || ||||| || || |||||
Sbjct 1550 TTGACGTTCTCTATTGTGTCAGATGCTTCGACTTCGAGCGTTATGGTCTTCCCGGTGAGA 1609
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||||||||| ||||||||
Sbjct 1610 GTCTTGACGAAAATCTGCAT 1629
>seq75105
Length=1195
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|||||||| || ||||| ||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 1055 CCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 996
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || ||| ||||| || | | || || ||||||||||| ||||| || || |
Sbjct 995 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 936
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| || ||||| |||||||||
Sbjct 935 GTTTTCACGAAAATCTGCATT 915
Score = 111 bits (122), Expect = 3e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || |||| || || || ||||||||||||||||| || ||||| || |||
Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| ||| || ||||| | | ||| |||||||| ||||| || ||||| || ||
Sbjct 372 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 313
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| ||||| || ||||||
Sbjct 312 GTCTTCACGAAGATTTGCATT 292
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| ||||| || ||||| || || || || |||||||| |||||||||||||| ||||||
Sbjct 739 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTT 680
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || || ||| || ||||| | | || ||||| | |||||||| ||||| ||
Sbjct 679 GCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGTC 620
Query 68439 AGGGTCTTGACGAATATCTGCATT 68462
|| ||||| || || || ||||||
Sbjct 619 AGCGTCTTCACAAAGATTTGCATT 596
>seq48601
Length=1711
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|||||||| || || | ||| ||||| || || |||||||||||||| || || || |||
Sbjct 241 CCGGCGAAGATAAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATTTTGGCC 182
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| ||||||||||||| | ||| || |||| ||||||||| || || || ||
Sbjct 181 TTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGT 122
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| |||||||| || ||||||
Sbjct 121 GTTTTGACGAAAATTTGCATT 101
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || ||||| | ||| || || || ||||| |||||||||||||| |||||
Sbjct 1389 CTTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTT 1330
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
||||| || ||| |||||||| | | ||| ||||| | ||| || ||||| || ||
Sbjct 1329 AGCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGT 1270
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| ||||| || || |||||||||
Sbjct 1269 CAGTGTCTTCACAAAGATCTGCATT 1245
Score = 104 bits (114), Expect = 4e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| ||||| || || |||| ||| || || |||||||| || |||||||||||||||||
Sbjct 541 CTTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTT 482
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|| || || ||||| || |||| | || ||||| | ||||| || ||||| ||
Sbjct 481 AGCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGT 422
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
| ||||| ||||| |||||||||
Sbjct 421 CAACGTCTTCACGAAGATCTGCATT 397
Score = 93.3 bits (102), Expect = 8e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402
|| || || || |||||||| |||||||| || || || || ||| ||| |||||||||
Sbjct 1711 TGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCAATGGTGTCT 1652
Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| | || |||||||||||||| || ||||| || | ||||| ||||| || |||||
Sbjct 1651 GAAGCCTCAACTTCCAAGGTGATAGTCTTTCCAGTCAAAGTCTTCACGAAGATTTGCAT 1593
>seq150799
Length=584
Score = 114 bits (126), Expect = 2e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|||||||| || ||||| || |||||||| ||||||||||||||||| || ||||| ||
Sbjct 444 CCGGCGAAGATAAGTCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 385
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || ||| ||||| || | | || || ||||||||||| ||||| || || |
Sbjct 384 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 325
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| || ||||| |||||||||
Sbjct 324 GTTTTCACGAAAATCTGCATT 304
Score = 100 bits (110), Expect = 5e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| ||||| || ||||| || || || || |||||||| |||||||||||||| ||||||
Sbjct 128 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTT 69
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || || ||| || ||||| | | || ||||| | ||||||||| ||||| ||
Sbjct 68 GCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGGGTGATGGTCTTTCCAGTC 9
Query 68439 AGGGTCTT 68446
|| |||||
Sbjct 8 AGCGTCTT 1
>seq133353
Length=689
Score = 111 bits (122), Expect = 3e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || |||| || || || ||||||||||||||||| || ||||| || |||
Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| ||| || ||||| | | ||| |||||||| ||||| || ||||| || ||
Sbjct 319 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 378
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| ||||| || ||||||
Sbjct 379 GTCTTCACGAAGATTTGCATT 399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 919694941953200
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