Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq54088 141 2e-28 seq51722 141 2e-28 seq133353 105 2e-17 seq75105 105 2e-17 seq150301 100 7e-16 seq48601 86.0 1e-11 >seq54088 Length=1574 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| ||| || ||||||||||||||||||| Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 229 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || ||||| || | ||| ||||| || |||||||| ||||| ||| | || Sbjct 230 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 289 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| || || || || ||||| || || |||| || || |||||| Sbjct 290 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 349 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || |||||||| || |||| ||||||||| || || |||||| Sbjct 350 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397 Score = 100 bits (110), Expect = 7e-16 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || || || ||||| ||||||||| ||| |||||||| || ||||||||||| Sbjct 538 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 597 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||||| |||||||| || | ||| | ||| || ||||| || || ||| | || || Sbjct 598 GGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGT 657 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 |||||||| ||||| |||||||| Sbjct 658 GAGAGTCTTAACGAA-GTCTGCATT 681 >seq51722 Length=1631 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| ||| || ||||||||||||||||||| Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 227 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || ||||| || | ||| ||||| || |||||||| ||||| ||| | || Sbjct 228 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 287 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| || || || || ||||| || || |||| || || |||||| Sbjct 288 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 347 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || |||||||| || |||| ||||||||| || || |||||| Sbjct 348 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| ||||| ||| | || || || || |||||||||||||| ||| Sbjct 1490 CCGGCAAAGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCT 1549 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| ||||| | || | ||| ||||||||||| || ||||||||||| ||| Sbjct 1550 TTGACGTTCTCTATTGTGTCAGATGCTTCGACTTCGAGCGTTATGGTCTTCCCGGTGAGA 1609 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| Sbjct 1610 GTCTTGACGAAAATCTGCAT 1629 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || || || ||||| ||||||||| ||| |||||||| |||||||||||||| Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||||| ||||| || || | ||| | ||| || ||||| || || ||||| || || Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 |||||||| ||||| ||||||||| Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || ||||| || || ||||| || ||||| |||||| || ||||| || ||| Sbjct 1143 TTACCAGCGAAAATAAGTCGCTGCTGG---TCTGGAGGGATTCCCTCCTTATCTTGAATT 1199 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| | ||| ||||| || || || || || || Sbjct 1200 TTTGCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCA 1259 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||||||||| |||||| Sbjct 1260 GTGAGAGTCTTGACGAATATTTGCATT 1286 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||| || |||| | |||||| ||||| || ||||||||||||||||| || Sbjct 847 CCTGCAAAAATCAATCTTTGTTGA---TCTGGAGGAATCCCTTCTTTATCCTGGATCTTG 903 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || || | || | || |||||||| ||||| || || || || Sbjct 904 GCTTTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTA 963 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 |||||||| || || ||||||||| Sbjct 964 AGAGTCTTCACAAAGATCTGCATT 987 >seq133353 Length=689 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||| ||| ||| || ||||| |||||||| ||||| || Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||| || ||| ||||| | |||||| ||||| || |||||| Sbjct 319 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 378 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 379 GTCTTCACGAAGATTTGCATT 399 >seq75105 Length=1195 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||| ||| ||| || ||||| |||||||| ||||| || Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||| || ||| ||||| | |||||| ||||| || |||||| Sbjct 372 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 313 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 312 GTCTTCACGAAGATTTGCATT 292 >seq150301 Length=587 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| ||||||||| | |||||||||||| || ||||| ||||| ||| Sbjct 515 CCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCT 456 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | ||| | ||| || || || ||||||||||| || || || Sbjct 455 TTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGC 396 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || || |||||||| Sbjct 395 GTTTTTACAAAGATCTGCAT 376 >seq48601 Length=1711 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||| || || || || ||||| ||| ||||| || ||||||||||| Sbjct 241 CCGGCGAAGATAAGGCGTTGCTGG---TCTGGCGGGATGCCTTCCTTGTCCTGGATTTTG 185 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | || | ||| || || || ||||| ||||| || ||| Sbjct 184 GCCTTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTC 125 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || || |||||||| || |||||| Sbjct 124 AGTGTTTTGACGAAAATTTGCATT 101 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| || ||| | ||||||||||| |||||||| || || Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | || | ||| ||||| | ||||| ||||| || ||| Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | || || ||||| ||||||||| Sbjct 904 AACGTTTTCACGAAGATCTGCATT 881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177125622786180