Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq11829 89.7 6e-13
seq63457 82.4 8e-11
seq23785 82.4 8e-11
>seq11829
Length=4251
Score = 89.7 bits (98), Expect = 6e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
||| |||| |||||| |||| | ||| |||||| |||||| | ||||||||||| |
Sbjct 2972 ATGCAAAACGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 2913
Query 57055 TACTCACCACTATACTACCGAGGA 57078
||||||||||||||||||||||||
Sbjct 2912 TACTCACCACTATACTACCGAGGA 2889
>seq63457
Length=1378
Score = 82.4 bits (90), Expect = 8e-11
Identities = 73/90 (81%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051
||||| ||||| |||||| |||| | ||| ||| || |||||||| ||||||| ||
Sbjct 1152 TTTAT-AAAAACCTTCTCCCCGGCCGGGAATTGAAGCCGGGTCTCCCATGTGACAGACGC 1094
Query 57052 ACATACTCACCACTATACTACCGAGGATTG 57081
||||||||||||||||||||||||| ||
Sbjct 1093 GGATACTCACCACTATACTACCGAGGACTG 1064
>seq23785
Length=2834
Score = 82.4 bits (90), Expect = 8e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
||| ||||||| |||| |||| | ||| |||||| |||||| | ||||||| || |
Sbjct 984 ATGCAAAATTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 926
Query 57055 TACTCACCACTATACTACCGAGGAT 57079
|||||||||||||||||||||||||
Sbjct 925 TACTCACCACTATACTACCGAGGAT 901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542076738330400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |