Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq11829 89.7 6e-13 seq63457 82.4 8e-11 seq23785 82.4 8e-11 >seq11829 Length=4251 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| |||| |||||| |||| | ||| |||||| |||||| | ||||||||||| | Sbjct 2972 ATGCAAAACGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 2913 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||||| Sbjct 2912 TACTCACCACTATACTACCGAGGA 2889 >seq63457 Length=1378 Score = 82.4 bits (90), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||||| ||||| |||||| |||| | ||| ||| || |||||||| ||||||| || Sbjct 1152 TTTAT-AAAAACCTTCTCCCCGGCCGGGAATTGAAGCCGGGTCTCCCATGTGACAGACGC 1094 Query 57052 ACATACTCACCACTATACTACCGAGGATTG 57081 ||||||||||||||||||||||||| || Sbjct 1093 GGATACTCACCACTATACTACCGAGGACTG 1064 >seq23785 Length=2834 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| ||||||| |||| |||| | ||| |||||| |||||| | ||||||| || | Sbjct 984 ATGCAAAATTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 926 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||||||||||| Sbjct 925 TACTCACCACTATACTACCGAGGAT 901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542076738330400