Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq54088 111 2e-19 seq51722 111 2e-19 >seq54088 Length=1574 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||| || || ||||| || || || || | | || || |||| Sbjct 184 AAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTC 243 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||| || ||| | || || |||||||| || ||||||||||| || || || Sbjct 244 CTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATC 303 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| ||| | || || || || ||||| | |||| || Sbjct 304 TTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGT 363 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || |||||||| || || |||||||||||| Sbjct 364 CTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397 >seq51722 Length=1631 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||| || || ||||| || || || || | | || || |||| Sbjct 182 AAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTC 241 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||| || ||| | || || |||||||| || ||||||||||| || || || Sbjct 242 CTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATC 301 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| ||| | || || || || ||||| | |||| || Sbjct 302 TTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGT 361 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || |||||||| || || |||||||||||| Sbjct 362 CTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || || |||| || ||||||||||| ||||| ||||| || || ||||| ||||| Sbjct 1142 CTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTT 1201 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 | ||| ||| || | ||||| || || ||||| | || | || ||||| || Sbjct 1202 TGCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGT 1261 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || ||||| ||||||||| Sbjct 1262 GAGAGTCTTGACGAATATTTGCATT 1286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498599855356400