Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 111 2e-19
seq51722 111 2e-19
>seq54088
Length=1574
Score = 111 bits (122), Expect = 2e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || |||| ||| || || ||||| || || || || | | || || ||||
Sbjct 184 AAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTC 243
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| || ||||| || ||| | || || |||||||| || ||||||||||| || || ||
Sbjct 244 CTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATC 303
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| || || ||| ||| ||| | || || || || ||||| | |||| ||
Sbjct 304 TTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGT 363
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| || |||||||| || || ||||||||||||
Sbjct 364 CTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397
>seq51722
Length=1631
Score = 111 bits (122), Expect = 2e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || |||| ||| || || ||||| || || || || | | || || ||||
Sbjct 182 AAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTC 241
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| || ||||| || ||| | || || |||||||| || ||||||||||| || || ||
Sbjct 242 CTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATC 301
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| || || ||| ||| ||| | || || || || ||||| | |||| ||
Sbjct 302 TTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGT 361
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| || |||||||| || || ||||||||||||
Sbjct 362 CTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395
Score = 82.4 bits (90), Expect = 8e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || || |||| || ||||||||||| ||||| ||||| || || ||||| |||||
Sbjct 1142 CTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTT 1201
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
| ||| ||| || | ||||| || || ||||| | || | || ||||| ||
Sbjct 1202 TGCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGT 1261
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || ||||| |||||||||
Sbjct 1262 GAGAGTCTTGACGAATATTTGCATT 1286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 498599855356400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |