Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq54088 96.9 3e-15 seq51722 96.9 3e-15 >seq54088 Length=1574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| || || |||||| || ||||| |||||||||||| || || | Sbjct 201 TTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAG 260 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||| || ||||| || || ||||| || || || || || ||| | || | || Sbjct 261 CAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATC-TTGAATCTTGGCCTTC 319 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | ||||| | || ||| || || | || | ||| || ||||||| ||| Sbjct 320 ACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTC 379 Query 138598 TTTACAAAAATCTGCAT 138614 || |||||||| ||||| Sbjct 380 TTGACAAAAATTTGCAT 396 >seq51722 Length=1631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| || || |||||| || ||||| |||||||||||| || || | Sbjct 199 TTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAG 258 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||| || ||||| || || ||||| || || || || || ||| | || | || Sbjct 259 CAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATC-TTGAATCTTGGCCTTC 317 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | ||||| | || ||| || || | || | ||| || ||||||| ||| Sbjct 318 ACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTC 377 Query 138598 TTTACAAAAATCTGCAT 138614 || |||||||| ||||| Sbjct 378 TTGACAAAAATTTGCAT 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495224529223200