Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 105 6e-18
seq51722 105 6e-18
>seq54088
Length=1574
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| ||||| ||||| || ||| || || ||| || || || || |||||
Sbjct 199 CGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCC 258
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
||| |||||| |||||||||||| ||||| || |||||||| || || || |||
Sbjct 259 AGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTT 318
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| | || | ||||||| ||| ||||| | ||| | ||| || || |||| |||
Sbjct 319 CACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGT 378
Query 127096 TTTTACAAAAATCTGCAT 127113
|| |||||||| |||||
Sbjct 379 CTTGACAAAAATTTGCAT 396
>seq51722
Length=1631
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| ||||| ||||| || ||| || || ||| || || || || |||||
Sbjct 197 CGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCC 256
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
||| |||||| |||||||||||| ||||| || |||||||| || || || |||
Sbjct 257 AGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTT 316
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| | || | ||||||| ||| ||||| | ||| | ||| || || |||| |||
Sbjct 317 CACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGT 376
Query 127096 TTTTACAAAAATCTGCAT 127113
|| |||||||| |||||
Sbjct 377 CTTGACAAAAATTTGCAT 394
Score = 91.5 bits (100), Expect = 1e-13
Identities = 102/134 (76%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040
||||||||||||||||||| ||||| || |||||||| ||| |||||| |||| |
Sbjct 1497 AGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCTTTGACGT 1556
Query 127041 GTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099
|| | ||||| | | || |||||||||| || | || || ||||| ||||| ||
Sbjct 1557 TCTCTATTGTGTCAGATGCT-TCGACTTCGAGCGTTATGGTCTTCCCGGTGAGAGTCTTG 1615
Query 127100 ACAAAAATCTGCAT 127113
|| |||||||||||
Sbjct 1616 ACGAAAATCTGCAT 1629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 474506349514400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |