Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq54088 105 6e-18 seq51722 105 6e-18 >seq54088 Length=1574 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| ||||| ||||| || ||| || || ||| || || || || ||||| Sbjct 199 CGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCC 258 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||||| |||||||||||| ||||| || |||||||| || || || ||| Sbjct 259 AGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTT 318 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | ||||||| ||| ||||| | ||| | ||| || || |||| ||| Sbjct 319 CACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGT 378 Query 127096 TTTTACAAAAATCTGCAT 127113 || |||||||| ||||| Sbjct 379 CTTGACAAAAATTTGCAT 396 >seq51722 Length=1631 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| ||||| ||||| || ||| || || ||| || || || || ||||| Sbjct 197 CGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCC 256 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||||| |||||||||||| ||||| || |||||||| || || || ||| Sbjct 257 AGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTT 316 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | ||||||| ||| ||||| | ||| | ||| || || |||| ||| Sbjct 317 CACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGT 376 Query 127096 TTTTACAAAAATCTGCAT 127113 || |||||||| ||||| Sbjct 377 CTTGACAAAAATTTGCAT 394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 ||||||||||||||||||| ||||| || |||||||| ||| |||||| |||| | Sbjct 1497 AGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCTTTGACGT 1556 Query 127041 GTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 || | ||||| | | || |||||||||| || | || || ||||| ||||| || Sbjct 1557 TCTCTATTGTGTCAGATGCT-TCGACTTCGAGCGTTATGGTCTTCCCGGTGAGAGTCTTG 1615 Query 127100 ACAAAAATCTGCAT 127113 || ||||||||||| Sbjct 1616 ACGAAAATCTGCAT 1629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474506349514400