Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq54088 105 6e-18 seq51722 105 6e-18 seq52966 91.5 1e-13 >seq54088 Length=1574 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || || || |||||||| ||||||||||||||||| ||| | Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCG--G 227 Query 45174 ACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || || || | ||| ||||| || | |||| ||| ||||| || || | Sbjct 228 ACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAG 287 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| || || ||||||||||| || || | || | ||||| || | ||| | Sbjct 288 GAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTA 347 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || | ||| || || || | ||| || |||||||||||||| Sbjct 348 CTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 396 >seq51722 Length=1631 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || || || |||||||| ||||||||||||||||| ||| | Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCG--G 225 Query 45174 ACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || || || | ||| ||||| || | |||| ||| ||||| || || | Sbjct 226 ACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAG 285 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| || || ||||||||||| || || | || | ||||| || | ||| | Sbjct 286 GAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTA 345 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || | ||| || || || | ||| || |||||||||||||| Sbjct 346 CTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 394 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 ||||| | ||||||| ||| || || || ||||| ||||||||||| || || || | Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 |||| || | || | ||||| || | ||| ||||||||||| | ||||| || || || Sbjct 907 TTGA-CGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAG 965 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| || ||||| Sbjct 966 AGTCTTCACAAAGATCTGCAT 986 Score = 89.7 bits (98), Expect = 5e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||||||| ||||| || || ||||| || || ||||| || ||||| ||||| || | Sbjct 1499 ATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCTTTGA-CGTT 1557 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 |||| ||||| || | ||||||||||| || | || || ||||| ||||| || || Sbjct 1558 CTCTATTGTGTCAGATGCTTCGACTTCGAGCGTTATGGTCTTCCCGGTGAGAGTCTTGAC 1617 Query 45329 AAAAATTTGCATC 45341 ||||| |||||| Sbjct 1618 GAAAATCTGCATC 1630 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||| |||||||| || || || || || ||||||||||||||| Sbjct 1143 TTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTTT 1202 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | || || || | |||||||| || |||| |||||||| || Sbjct 1203 GCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGTG 1262 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || |||||||| Sbjct 1263 AGAGTCTTGACGAATATTTGCAT 1285 >seq52966 Length=1601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 ||||||||||| || ||||| || ||||| ||||| || || || | ||||| Sbjct 1108 CGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTTTCTATA 1049 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 ||||| |||| |||||| ||||| |||| || || || || |||||||| ||||| ||| Sbjct 1048 GTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGAGTTTTCACAAAGATT 989 Query 45336 TGCAT 45340 ||||| Sbjct 988 TGCAT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451057891807600