Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq54088 127 5e-24 seq51722 127 5e-24 seq133353 86.0 1e-11 seq75105 86.0 1e-11 seq48601 86.0 1e-11 >seq54088 Length=1574 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| || || ||||||||||||| || ||||| | ||| || Sbjct 176 CGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTA 235 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || |||||||| || ||||| || |||||||| || ||| |||||| Sbjct 236 CGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCC 295 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||||| | | ||||| |||| Sbjct 296 TCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGG 355 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || | ||| || ||||||||||| Sbjct 356 GTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 393 >seq51722 Length=1631 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| || || ||||||||||||| || ||||| | ||| || Sbjct 174 CGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTA 233 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || |||||||| || ||||| || |||||||| || ||| |||||| Sbjct 234 CGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCC 293 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||||| | | ||||| |||| Sbjct 294 TCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGG 353 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || | ||| || ||||||||||| Sbjct 354 GTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 391 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 200947 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 201006 ||||| || |||||||||| | ||| || ||||||||||| | ||||||||||| ||| Sbjct 1375 GGAAAACAACTGGAAGATGGCCGCACTCTGTCCGATTACAACATTCAGAAAGAGTCGACT 1316 Query 201007 CTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||||| || |||||||| Sbjct 1315 CTTCATCTTGTATTAAGACTTCG 1293 >seq133353 Length=689 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || ||||| || |||||||| ||||| ||| ||||| |||||||| || | Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| || | ||||| | | ||| || ||||||||||| ||||| || || ||| Sbjct 319 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 378 Query 199610 GTTTTCACAAAAATTTG 199626 || ||||| || ||||| Sbjct 379 GTCTTCACGAAGATTTG 395 >seq75105 Length=1195 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || ||||| || |||||||| ||||| ||| ||||| |||||||| || | Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| || | ||||| | | ||| || ||||||||||| ||||| || || ||| Sbjct 372 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 313 Query 199610 GTTTTCACAAAAATTTG 199626 || ||||| || ||||| Sbjct 312 GTCTTCACGAAGATTTG 296 >seq48601 Length=1711 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||||||||| || || |||||||| || || ||||| ||||| || || | Sbjct 241 CCGGCGAAGATAAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATTTTGGCC 182 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || ||| ||||| |||||||| | ||| || |||| ||||| ||||| || || || Sbjct 181 TTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGT 122 Query 199610 GTTTTCACAAAAATTTG 199626 ||||| || |||||||| Sbjct 121 GTTTTGACGAAAATTTG 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176394393659770