Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 127 5e-24
seq51722 127 5e-24
seq133353 86.0 1e-11
seq75105 86.0 1e-11
seq48601 86.0 1e-11
>seq54088
Length=1574
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || |||||||| || || ||||||||||||| || ||||| | ||| ||
Sbjct 176 CGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTA 235
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || || |||||||| || ||||| || |||||||| || ||| ||||||
Sbjct 236 CGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCC 295
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| |||||| || | ||||| | | ||||| ||||
Sbjct 296 TCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGG 355
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || | ||| || |||||||||||
Sbjct 356 GTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 393
>seq51722
Length=1631
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || |||||||| || || ||||||||||||| || ||||| | ||| ||
Sbjct 174 CGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTA 233
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || || |||||||| || ||||| || |||||||| || ||| ||||||
Sbjct 234 CGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCC 293
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| |||||| || | ||||| | | ||||| ||||
Sbjct 294 TCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGG 353
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || | ||| || |||||||||||
Sbjct 354 GTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 391
Score = 87.8 bits (96), Expect = 4e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 200947 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 201006
||||| || |||||||||| | ||| || ||||||||||| | ||||||||||| |||
Sbjct 1375 GGAAAACAACTGGAAGATGGCCGCACTCTGTCCGATTACAACATTCAGAAAGAGTCGACT 1316
Query 201007 CTTCACCTTGTTTTGAGACTTCG 201029
||||| ||||| || ||||||||
Sbjct 1315 CTTCATCTTGTATTAAGACTTCG 1293
>seq133353
Length=689
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
|| || ||||| || |||||||| ||||| ||| ||||| |||||||| || |
Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
|||||| || | ||||| | | ||| || ||||||||||| ||||| || || |||
Sbjct 319 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 378
Query 199610 GTTTTCACAAAAATTTG 199626
|| ||||| || |||||
Sbjct 379 GTCTTCACGAAGATTTG 395
>seq75105
Length=1195
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
|| || ||||| || |||||||| ||||| ||| ||||| |||||||| || |
Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
|||||| || | ||||| | | ||| || ||||||||||| ||||| || || |||
Sbjct 372 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 313
Query 199610 GTTTTCACAAAAATTTG 199626
|| ||||| || |||||
Sbjct 312 GTCTTCACGAAGATTTG 296
>seq48601
Length=1711
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
||||||||||| || || |||||||| || || ||||| ||||| || || |
Sbjct 241 CCGGCGAAGATAAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATTTTGGCC 182
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
|| ||| ||||| |||||||| | ||| || |||| ||||| ||||| || || ||
Sbjct 181 TTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGT 122
Query 199610 GTTTTCACAAAAATTTG 199626
||||| || ||||||||
Sbjct 121 GTTTTGACGAAAATTTG 105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176394393659770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |