Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq54088 87.8 2e-12 seq51722 87.8 2e-12 >seq54088 Length=1574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||| |||||||| | || || |||| ||||| ||||| || || || Sbjct 205 CTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAA 264 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | | |||||| || ||||| ||| | | Sbjct 265 GATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATT 324 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || |||| || || || || || |||| || || || Sbjct 325 CTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGAC 384 Query 46582 AAAGATTTGCATT 46594 ||| ||||||||| Sbjct 385 AAAAATTTGCATT 397 >seq51722 Length=1631 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||| |||||||| | || || |||| ||||| ||||| || || || Sbjct 203 CTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAA 262 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | | |||||| || ||||| ||| | | Sbjct 263 GATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATT 322 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || |||| || || || || || |||| || || || Sbjct 323 CTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGAC 382 Query 46582 AAAGATTTGCATT 46594 ||| ||||||||| Sbjct 383 AAAAATTTGCATT 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564056274541200