Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 87.8 2e-12
seq51722 87.8 2e-12
>seq54088
Length=1574
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||||||||||||||| |||||||| | || || |||| ||||| ||||| || || ||
Sbjct 205 CTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAA 264
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||| || | || | | |||||| || ||||| ||| | |
Sbjct 265 GATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATT 324
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || || || |||| || || || || || |||| || || ||
Sbjct 325 CTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGAC 384
Query 46582 AAAGATTTGCATT 46594
||| |||||||||
Sbjct 385 AAAAATTTGCATT 397
>seq51722
Length=1631
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||||||||||||||| |||||||| | || || |||| ||||| ||||| || || ||
Sbjct 203 CTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAA 262
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||| || | || | | |||||| || ||||| ||| | |
Sbjct 263 GATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATT 322
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || || || |||| || || || || || |||| || || ||
Sbjct 323 CTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGAC 382
Query 46582 AAAGATTTGCATT 46594
||| |||||||||
Sbjct 383 AAAAATTTGCATT 395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564056274541200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |