Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq84433 122 3e-22 seq21886 111 6e-19 seq51722 107 8e-18 seq54088 100 1e-15 seq150301 98.7 4e-15 seq48601 91.5 6e-13 >seq84433 Length=1073 Score = 122 bits (134), Expect = 3e-22 Identities = 243/359 (68%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || ||||||||||| |||||||||| || ||||| |||| || || ||| || Sbjct 436 CCCGAAGAAATTTCGGCTATGGTTCTCGGAAAGATGAAGGAAATTGCCGAGTCCTATCTT 495 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || ||| | | || ||| | |||||||| || || ||||| ||||| ||||| Sbjct 496 GGAAAGGAAGTGAAACACGCTGTAGTAACTGTTCCTGCCTACTTCAACGATGCCCAACGT 555 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || || || || ||| || ||||| | |||||| | |||||||| || || Sbjct 556 CAAGCCACCAAGGACGCCGGAACCATCGCTGGACTTAATGTTGTACGAATTATCAACGAG 615 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 || || ||||| ||| | || || || || | || ||| || | ||| || Sbjct 616 CCAACTGCAGCCGCTATCGCCTACGGTCTTGACAAG----AAGGAA--GGAGAGCGCAAC 669 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543 || | ||||| || || || || || || |||| ||| | ||| | || || | Sbjct 670 ATCCTCGTATTCGACTTGGGAGGTGGTACCTTTGATGTGTCTATGCTTACCATCGACAAC 729 Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 || ||||| |||||| ||| || || || || || || | |||||||||||| |||| Sbjct 730 GGTGTATTCGAAGTATTGGCCACTAACGGAGACACCCACTTGGGAGGTGAAGATTTTGA 788 >seq21886 Length=2983 Score = 111 bits (122), Expect = 6e-19 Identities = 197/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || || ||||| || ||||| |||||||| | ||||| || || || |||||| Sbjct 1778 GATGCTGTCATCACTGTCCCTGCTTACTTCAATGACTCTCAACGTCAGGCTACCAAAGAT 1719 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || || | || | ||||||||||||||||| || ||||| || ||||||||| Sbjct 1718 GCCGGTGCCATCTCAGGAATGAATGTTCTTCGAATTATCAACGAACCCACTGCAGCTGCT 1659 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | || || | | || ||| || | | | || ||| Sbjct 1658 ATCGCCTACGGTCTCGACAA---GAAGGGACAAGGAGAGCGCAACGTCCTTATTTTCGAT 1602 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 | || || || || ||| ||| | || | || || ||||| | || |||||| Sbjct 1601 CTCGGAGGTGGTACCTTCGATGTCTCTATCCTGACTATCGAGGATGGAATTTTCGAAGTA 1542 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| | || ||||||||||||||| ||||| ||||| |||| || Sbjct 1541 AAGTCTACTGCTGGTGATACTCATCTTGGAGGAGAAGACTTTGACAA 1495 >seq51722 Length=1631 Score = 107 bits (118), Expect = 8e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || ||||| ||||| ||||| ||||| || ||| |||| Sbjct 1286 AATGCAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATC 1227 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| | |||| |||||||||||||||||| ||||| ||||| || || Sbjct 1226 GGATACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCA 1167 Query 391169 ACAACGTTTAATTTTCTCAGGGAA 391192 || || | |||||| | || || Sbjct 1166 GCAGCGACTTATTTTCGCTGGTAA 1143 Score = 100 bits (110), Expect = 1e-15 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || ||||||| || || || || || || || || | || Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | || || |||||||||||||| ||||||||||||||||| Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 276 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | || || | || || ||||| || || || | || ||| | || ||||| Sbjct 275 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 216 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| |||| |||||| Sbjct 215 TATCCAAAAGGAGTCAACGCTTCAC 191 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || |||||||| || || ||||| || ||||||||||| || |||||| |||| Sbjct 683 AATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATC 624 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 623 CGACACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCA 564 Query 391169 ACAACGTTTAATTTT 391183 ||| || | ||||| Sbjct 563 ACAGCGACTGATTTT 549 >seq54088 Length=1574 Score = 100 bits (110), Expect = 1e-15 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || ||||||| || || || || || || || || | || Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | || || |||||||||||||| ||||||||||||||||| Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 278 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | || || | || || ||||| || || || | || ||| | || ||||| Sbjct 277 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 218 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| |||| |||||| Sbjct 217 TATCCAAAAGGAGTCAACGCTTCAC 193 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 391059 TTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATT 391118 |||||||| || || ||||| | ||||||||||| || |||||| |||| || | || Sbjct 672 TTCGTTAAGACTCTCACTGGCAGGACTATTACTCTCGAGGTTGAAGCATCCGACACAATC 613 Query 391119 GAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTA 391178 ||| | ||| ||||| || || |||||||||||||| || |||||||| || | Sbjct 612 GAAAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCACCAGATCAACAGCGACTG 553 Query 391179 ATTTT 391183 ||||| Sbjct 552 ATTTT 548 >seq150301 Length=587 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || ||||| || || || || ||||| || ||| | || Sbjct 376 ATGCAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTCG 435 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| ||||||||| || ||||||||||| || ||||||||| Sbjct 436 GATACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAA 495 Query 391170 CAACGTTTAATTTT 391183 || || || ||||| Sbjct 496 CAGCGATTGATTTT 509 >seq48601 Length=1711 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || |||||||| || ||||| ||||| || || || ||| | || Sbjct 1245 AATGCAGATCTTTGTGAAGACACTGACAGGGAAAACAATTACCCTCGAAGTCGAAGCTTC 1304 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | || || || ||||| ||||||||||||||||||||||| Sbjct 1305 GGACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCA 1364 Query 391169 ACAACGTTTAATTTT 391183 |||||| | || || Sbjct 1365 GCAACGTCTCATCTT 1379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971483132729480