Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq84433 122 3e-22
seq21886 111 6e-19
seq51722 107 8e-18
seq54088 100 1e-15
seq150301 98.7 4e-15
seq48601 91.5 6e-13
>seq84433
Length=1073
Score = 122 bits (134), Expect = 3e-22
Identities = 243/359 (68%), Gaps = 6/359 (2%)
Strand=Plus/Plus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
|| ||||||||||| |||||||||| || ||||| |||| || || ||| ||
Sbjct 436 CCCGAAGAAATTTCGGCTATGGTTCTCGGAAAGATGAAGGAAATTGCCGAGTCCTATCTT 495
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
|| ||| | | || ||| | |||||||| || || ||||| ||||| |||||
Sbjct 496 GGAAAGGAAGTGAAACACGCTGTAGTAACTGTTCCTGCCTACTTCAACGATGCCCAACGT 555
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
||||| || || || || ||| || ||||| | |||||| | |||||||| || ||
Sbjct 556 CAAGCCACCAAGGACGCCGGAACCATCGCTGGACTTAATGTTGTACGAATTATCAACGAG 615
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483
|| || ||||| ||| | || || || || | || ||| || | ||| ||
Sbjct 616 CCAACTGCAGCCGCTATCGCCTACGGTCTTGACAAG----AAGGAA--GGAGAGCGCAAC 669
Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543
|| | ||||| || || || || || || |||| ||| | ||| | || || |
Sbjct 670 ATCCTCGTATTCGACTTGGGAGGTGGTACCTTTGATGTGTCTATGCTTACCATCGACAAC 729
Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602
|| ||||| |||||| ||| || || || || || || | |||||||||||| ||||
Sbjct 730 GGTGTATTCGAAGTATTGGCCACTAACGGAGACACCCACTTGGGAGGTGAAGATTTTGA 788
>seq21886
Length=2983
Score = 111 bits (122), Expect = 6e-19
Identities = 197/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378
||||| || || ||||| || ||||| |||||||| | ||||| || || || ||||||
Sbjct 1778 GATGCTGTCATCACTGTCCCTGCTTACTTCAATGACTCTCAACGTCAGGCTACCAAAGAT 1719
Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438
|| || || | || | ||||||||||||||||| || ||||| || |||||||||
Sbjct 1718 GCCGGTGCCATCTCAGGAATGAATGTTCTTCGAATTATCAACGAACCCACTGCAGCTGCT 1659
Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498
| || || || || | || || | | || ||| || | | | || |||
Sbjct 1658 ATCGCCTACGGTCTCGACAA---GAAGGGACAAGGAGAGCGCAACGTCCTTATTTTCGAT 1602
Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558
| || || || || ||| ||| | || | || || ||||| | || ||||||
Sbjct 1601 CTCGGAGGTGGTACCTTCGATGTCTCTATCCTGACTATCGAGGATGGAATTTTCGAAGTA 1542
Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
||| | || ||||||||||||||| ||||| ||||| |||| ||
Sbjct 1541 AAGTCTACTGCTGGTGATACTCATCTTGGAGGAGAAGACTTTGACAA 1495
>seq51722
Length=1631
Score = 107 bits (118), Expect = 8e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || ||||| || || || ||||| ||||| ||||| ||||| || ||| ||||
Sbjct 1286 AATGCAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATC 1227
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|||| |||||| | |||| |||||||||||||||||| ||||| ||||| || ||
Sbjct 1226 GGATACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCA 1167
Query 391169 ACAACGTTTAATTTTCTCAGGGAA 391192
|| || | |||||| | || ||
Sbjct 1166 GCAGCGACTTATTTTCGCTGGTAA 1143
Score = 100 bits (110), Expect = 1e-15
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| || || || ||||||| || || || || || || || || | ||
Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | ||||| | | || || |||||||||||||| |||||||||||||||||
Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 276
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| || | || || | || || ||||| || || || | || ||| | || |||||
Sbjct 275 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 216
Query 391229 TATTGATAAGGATGCAACACTTCAC 391253
||| | ||||| |||| ||||||
Sbjct 215 TATCCAAAAGGAGTCAACGCTTCAC 191
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || |||||||| || || ||||| || ||||||||||| || |||||| ||||
Sbjct 683 AATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATC 624
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | || || | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 623 CGACACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCA 564
Query 391169 ACAACGTTTAATTTT 391183
||| || | |||||
Sbjct 563 ACAGCGACTGATTTT 549
>seq54088
Length=1574
Score = 100 bits (110), Expect = 1e-15
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| || || || ||||||| || || || || || || || || | ||
Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | ||||| | | || || |||||||||||||| |||||||||||||||||
Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 278
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| || | || || | || || ||||| || || || | || ||| | || |||||
Sbjct 277 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 218
Query 391229 TATTGATAAGGATGCAACACTTCAC 391253
||| | ||||| |||| ||||||
Sbjct 217 TATCCAAAAGGAGTCAACGCTTCAC 193
Score = 86.0 bits (94), Expect = 2e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 391059 TTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATT 391118
|||||||| || || ||||| | ||||||||||| || |||||| |||| || | ||
Sbjct 672 TTCGTTAAGACTCTCACTGGCAGGACTATTACTCTCGAGGTTGAAGCATCCGACACAATC 613
Query 391119 GAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTA 391178
||| | ||| ||||| || || |||||||||||||| || |||||||| || |
Sbjct 612 GAAAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCACCAGATCAACAGCGACTG 553
Query 391179 ATTTT 391183
|||||
Sbjct 552 ATTTT 548
>seq150301
Length=587
Score = 98.7 bits (108), Expect = 4e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || ||||| || ||||| || || || || ||||| || ||| | ||
Sbjct 376 ATGCAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTCG 435
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | ||| ||||||||| || ||||||||||| || |||||||||
Sbjct 436 GATACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAA 495
Query 391170 CAACGTTTAATTTT 391183
|| || || |||||
Sbjct 496 CAGCGATTGATTTT 509
>seq48601
Length=1711
Score = 91.5 bits (100), Expect = 6e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || || |||||||| || ||||| ||||| || || || ||| | ||
Sbjct 1245 AATGCAGATCTTTGTGAAGACACTGACAGGGAAAACAATTACCCTCGAAGTCGAAGCTTC 1304
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | |||||| | | || || || ||||| |||||||||||||||||||||||
Sbjct 1305 GGACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCA 1364
Query 391169 ACAACGTTTAATTTT 391183
|||||| | || ||
Sbjct 1365 GCAACGTCTCATCTT 1379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1971483132729480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |