Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq21886 212 5e-49 seq84433 122 7e-22 >seq21886 Length=2983 Score = 212 bits (234), Expect = 5e-49 Identities = 670/1024 (65%), Gaps = 22/1024 (2%) Strand=Plus/Plus Query 517295 AATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAAT 517354 ||| | || ||||||||||| || || | | || || || || || || | ||| Sbjct 766 AATCTTACCTCAATTTGAGGTACTCCACGAGGCGCTGGCGGAATTCCAGACAGCTCAAAC 825 Query 517355 GTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTA 517414 |||| || ||| || || || || | || || || || || | |||||| Sbjct 826 TTTCCAAGGAGATTGTTGTCCTTGGTCATAGCACGCTCTCCTTCAAAGACCTGGATAAGT 885 Query 517415 ACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGT 517473 || ||| ||| || || ||||| || || ||| ||||| | | || || || || Sbjct 886 ACGCCAGGTTGGTTGTCGGAATACGTGGTGAATG-TCTGGCTGGTCTTGGTGGGGATGGT 944 Query 517474 TGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAG 517533 ||||| || | || | | |||||| | ||| || || || || | |||||| ||||| Sbjct 945 CGTGTTCCTCTTGATTAGAGCGGTCATCACACCTCCGGCGGTCTCGATACCAAGCGAAAG 1004 Query 517534 AGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAA 517592 ||||| ||||| | || | | || ||| | ||| | | || | ||| ||| | Sbjct 1005 AGGAGCAACATCGAGAAGCAGGAGATCTTGCACAGCTTC-TGACTTGTCACCGGAAAGGA 1063 Query 517593 TAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTA 517652 |||| ||||| | ||| ||||| || || ||||||||||| || || | | | || | Sbjct 1064 TAGCAGCTTGCACAGCCGCACCGTAGGCGACAGCTTCATCGGGGTTGATGGACTTGTTCA 1123 Query 517653 GTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATC 517712 ||| || ||| ||||| || ||||| || | | |||||||| ||||||| || | Sbjct 1124 GTTCCTTTCCAGAGAAAAGATCCGAAAGGAGCTTTTGCACCTTAGGGATACGAGTGGAAC 1183 Query 517713 CTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA-AAACT 517771 |||| || || ||||| ||||| | ||| || |||| ||| | |||| | | ||| Sbjct 1184 CTCCGACCAAGACAATATCATGGATCTGACTCTTGTCCATTTTAGCATCCCTCAGAGACT 1243 Query 517772 TTTTCAACGGGTTCA----AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTT 517827 | | || |||| || ||| | | || | || | || || ||||| || Sbjct 1244 TCTCCACAGGGTCCATGGTAGAACGG-----AAGAGATCAGCGCACAGCTCTTCAAAACG 1298 Query 517828 AGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCG 517886 ||| | ||| | || | || || ||||| || || |||| || || | |||||| | Sbjct 1299 AGCACGAGTGA-TGTTAGTGTAGAAGTCAATACCCTCAAACAGCGAGTCGATTTCAATTG 1357 Query 517887 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 517946 || |||| || ||||| || | ||| || ||||| || || || || | || | | Sbjct 1358 AAGCCTGAGATGACGAAGAGAGGGTACGCTTGGCACGCTCGCAAGCGGTGCGGAGACGAC 1417 Query 517947 GTAAGGC-TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACA 518005 | | ||| | | | || || | |||| | || | || | ||||| || | ||| Sbjct 1418 GGAGGGCACGAGGGTTAGTG-TTGAGATCTTTCTTGTGCTTGCGTTTGAATTCGGCGACA 1476 Query 518006 CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 518065 | | || | || || ||||| ||||| ||||| | | ||||| || | ||| Sbjct 1477 AAGTGGTTGACCATTCGGTTGTCAAAGTCTTCTCCTCCAAGATGAGTATCACCAGCAGTA 1536 Query 518066 GCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCA 518125 | |||||| ||||| |||||| || | || || | || ||||| ||| ||||| Sbjct 1537 GACTTTACTTCGAAAATTCCATCCTCGATAGTCAGGATAGAGACATCGAAGGTACCACCT 1596 Query 518126 CCCATATCAAAAATAAGTACATT--CATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 518183 || | ||| |||||||| || || | || ||||| || || || ||||| || | Sbjct 1597 CCGAGATCGAAAATAAGGACGTTGCGCTCTCCTTGTC--CCTTCTTGTCGAGACCGTAGG 1654 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 | | |||||| ||||| ||||| || ||||||| | |||||| | || | || | Sbjct 1655 CGATAGCAGCTGCAGTGGGTTCGTTGATAATTCGAAGAACATTCATTCCTGAGATGGCAC 1714 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 | |||||||| || || || | ||| || || || || || ||||| ||||| || || | Sbjct 1715 CGGCATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGGACAGTGATGACAG 1774 Query 518304 CATC 518307 |||| Sbjct 1775 CATC 1778 >seq84433 Length=1073 Score = 122 bits (134), Expect = 7e-22 Identities = 241/356 (68%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 |||||||||||||||||||| | || | ||| || || ||||| ||| | || Sbjct 788 TCAAAATCTTCACCTCCCAAGTGGGTGTCTCCGTTAGTGGCCAATACTTCGAATACACCG 729 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | || | | | | || |||||| ||| ||||| |||| || || | || | Sbjct 728 TTGTCGATGGTAAGCATAGACACATCAAAGGTACCACCTCCCAAGTCGAATACGAGGATG 669 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 || ||| ||| || || |||||||| || || | ||| || |||||||| || Sbjct 668 TTGCGCTCTC---CTTCCTTCTTGTCAAGACCGTAGGCGATAGCGGCTGCAGTTGGCTCG 612 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || ||||||| | ||||||||| ||||| || |||| || || || |||||||| | | Sbjct 611 TTGATAATTCGTACAACATTAAGTCCAGCGATGGTTCCGGCGTCCTTGGTGGCTTGACGT 552 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || | |||||| || || ||||||||||| | || || | | ||||| || |||| | Sbjct 551 TGGGCATCGTTGAAGTAGGCAGGAACAGTTACTACAGCGTGTTTCACTTCCTTTCCAAGA 492 Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 || | || ||| ||||| || | | || ||| | ||||||| ||| || Sbjct 491 TAGGACTCGGCAATTTCCTTCATCTTTCCGAGAACCATAGCCGAAATTTCTTCGGG 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3772519926680860