Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq21886 212 5e-49
seq84433 122 7e-22
>seq21886
Length=2983
Score = 212 bits (234), Expect = 5e-49
Identities = 670/1024 (65%), Gaps = 22/1024 (2%)
Strand=Plus/Plus
Query 517295 AATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAAT 517354
||| | || ||||||||||| || || | | || || || || || || | |||
Sbjct 766 AATCTTACCTCAATTTGAGGTACTCCACGAGGCGCTGGCGGAATTCCAGACAGCTCAAAC 825
Query 517355 GTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTA 517414
|||| || ||| || || || || | || || || || || | ||||||
Sbjct 826 TTTCCAAGGAGATTGTTGTCCTTGGTCATAGCACGCTCTCCTTCAAAGACCTGGATAAGT 885
Query 517415 ACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGT 517473
|| ||| ||| || || ||||| || || ||| ||||| | | || || || ||
Sbjct 886 ACGCCAGGTTGGTTGTCGGAATACGTGGTGAATG-TCTGGCTGGTCTTGGTGGGGATGGT 944
Query 517474 TGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAG 517533
||||| || | || | | |||||| | ||| || || || || | |||||| |||||
Sbjct 945 CGTGTTCCTCTTGATTAGAGCGGTCATCACACCTCCGGCGGTCTCGATACCAAGCGAAAG 1004
Query 517534 AGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAA 517592
||||| ||||| | || | | || ||| | ||| | | || | ||| ||| |
Sbjct 1005 AGGAGCAACATCGAGAAGCAGGAGATCTTGCACAGCTTC-TGACTTGTCACCGGAAAGGA 1063
Query 517593 TAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTA 517652
|||| ||||| | ||| ||||| || || ||||||||||| || || | | | || |
Sbjct 1064 TAGCAGCTTGCACAGCCGCACCGTAGGCGACAGCTTCATCGGGGTTGATGGACTTGTTCA 1123
Query 517653 GTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATC 517712
||| || ||| ||||| || ||||| || | | |||||||| ||||||| || |
Sbjct 1124 GTTCCTTTCCAGAGAAAAGATCCGAAAGGAGCTTTTGCACCTTAGGGATACGAGTGGAAC 1183
Query 517713 CTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA-AAACT 517771
|||| || || ||||| ||||| | ||| || |||| ||| | |||| | | |||
Sbjct 1184 CTCCGACCAAGACAATATCATGGATCTGACTCTTGTCCATTTTAGCATCCCTCAGAGACT 1243
Query 517772 TTTTCAACGGGTTCA----AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTT 517827
| | || |||| || ||| | | || | || | || || ||||| ||
Sbjct 1244 TCTCCACAGGGTCCATGGTAGAACGG-----AAGAGATCAGCGCACAGCTCTTCAAAACG 1298
Query 517828 AGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCG 517886
||| | ||| | || | || || ||||| || || |||| || || | |||||| |
Sbjct 1299 AGCACGAGTGA-TGTTAGTGTAGAAGTCAATACCCTCAAACAGCGAGTCGATTTCAATTG 1357
Query 517887 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 517946
|| |||| || ||||| || | ||| || ||||| || || || || | || | |
Sbjct 1358 AAGCCTGAGATGACGAAGAGAGGGTACGCTTGGCACGCTCGCAAGCGGTGCGGAGACGAC 1417
Query 517947 GTAAGGC-TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACA 518005
| | ||| | | | || || | |||| | || | || | ||||| || | |||
Sbjct 1418 GGAGGGCACGAGGGTTAGTG-TTGAGATCTTTCTTGTGCTTGCGTTTGAATTCGGCGACA 1476
Query 518006 CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 518065
| | || | || || ||||| ||||| ||||| | | ||||| || | |||
Sbjct 1477 AAGTGGTTGACCATTCGGTTGTCAAAGTCTTCTCCTCCAAGATGAGTATCACCAGCAGTA 1536
Query 518066 GCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCA 518125
| |||||| ||||| |||||| || | || || | || ||||| ||| |||||
Sbjct 1537 GACTTTACTTCGAAAATTCCATCCTCGATAGTCAGGATAGAGACATCGAAGGTACCACCT 1596
Query 518126 CCCATATCAAAAATAAGTACATT--CATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 518183
|| | ||| |||||||| || || | || ||||| || || || ||||| || |
Sbjct 1597 CCGAGATCGAAAATAAGGACGTTGCGCTCTCCTTGTC--CCTTCTTGTCGAGACCGTAGG 1654
Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243
| | |||||| ||||| ||||| || ||||||| | |||||| | || | || |
Sbjct 1655 CGATAGCAGCTGCAGTGGGTTCGTTGATAATTCGAAGAACATTCATTCCTGAGATGGCAC 1714
Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303
| |||||||| || || || | ||| || || || || || ||||| ||||| || || |
Sbjct 1715 CGGCATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGGACAGTGATGACAG 1774
Query 518304 CATC 518307
||||
Sbjct 1775 CATC 1778
>seq84433
Length=1073
Score = 122 bits (134), Expect = 7e-22
Identities = 241/356 (68%), Gaps = 3/356 (1%)
Strand=Plus/Minus
Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086
|||||||||||||||||||| | || | ||| || || ||||| ||| | ||
Sbjct 788 TCAAAATCTTCACCTCCCAAGTGGGTGTCTCCGTTAGTGGCCAATACTTCGAATACACCG 729
Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146
| || | | | | || |||||| ||| ||||| |||| || || | || |
Sbjct 728 TTGTCGATGGTAAGCATAGACACATCAAAGGTACCACCTCCCAAGTCGAATACGAGGATG 669
Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206
|| ||| ||| || || |||||||| || || | ||| || |||||||| ||
Sbjct 668 TTGCGCTCTC---CTTCCTTCTTGTCAAGACCGTAGGCGATAGCGGCTGCAGTTGGCTCG 612
Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266
|| ||||||| | ||||||||| ||||| || |||| || || || |||||||| | |
Sbjct 611 TTGATAATTCGTACAACATTAAGTCCAGCGATGGTTCCGGCGTCCTTGGTGGCTTGACGT 552
Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326
|| | |||||| || || ||||||||||| | || || | | ||||| || |||| |
Sbjct 551 TGGGCATCGTTGAAGTAGGCAGGAACAGTTACTACAGCGTGTTTCACTTCCTTTCCAAGA 492
Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382
|| | || ||| ||||| || | | || ||| | ||||||| ||| ||
Sbjct 491 TAGGACTCGGCAATTTCCTTCATCTTTCCGAGAACCATAGCCGAAATTTCTTCGGG 436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3772519926680860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |