Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq21886 268 1e-66
seq84433 181 1e-40
>seq21886
Length=2983
Score = 268 bits (296), Expect = 1e-66
Identities = 671/1016 (66%), Gaps = 4/1016 (0%)
Strand=Plus/Plus
Query 6725 AACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAAT 6784
|| ||||| | |||||| ||| || | || || | ||||| || | | |||||
Sbjct 766 AATCTTACCTCAATTTGAGGTACTCCACGAGGCGCTGGCGGAATTCCAGACAGCTCAAAC 825
Query 6785 GTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTC 6844
| ||||| | | |||| ||| | | | | ||| || |||||| |||| | ||
Sbjct 826 TTTCCAAGGAGATTGTTGTCCTTGGTCATAGCACGCTCTCCTTCAAAGACCTGGATAAGT 885
Query 6845 ACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTC 6904
|| ||||||| || || ||| | ||| | || |||| | || || |||
Sbjct 886 ACGCCAGGTTGGTTGTCGGAATACGTGGTGAATGTCTGGCTGGTCTTGGTGGGGATGGTC 945
Query 6905 GTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGA 6964
|| || ||| || | | |||||| | ||| || || |||| ||||| || |||
Sbjct 946 GTGTTCCTCTTGATTAGAGCGGTCATCACACCTCCGGCGGTCTCGATACCAAGCGAAAGA 1005
Query 6965 GGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATG 7024
|| | || || | || | || ||||| |||| ||| | ||||| | | |||
Sbjct 1006 GGAGCAACATCGAGAAGCAGGAGATCTTGCACAGCTTCTGACTTGTCACCGGAAAGGATA 1065
Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084
|| ||||| || | ||| ||||| ||||| || ||||||||||| || | || ||||||
Sbjct 1066 GCAGCTTGCACAGCCGCACCGTAGGCGACAGCTTCATCGGGGTTGATGGACTTGTTCAGT 1125
Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144
|| || || ||| |||||| | | | ||| | || ||||| || || || ||
Sbjct 1126 TCCTTTCCAGAGAAAAGATCCGAAAGGAGCTTTTGCACCTTAGGGATACGAGTGGAACCT 1185
Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204
|||||||| || || |||| | | || || || || | || | || | ||
Sbjct 1186 CCGACCAAGACAATATCATGGATCTGACTCTTGTCCATTTTAGCATCCCTCAGAGACTTC 1245
Query 7205 TCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGG 7264
|| ||||| ||||| |||||| | || ||||| || |||||||| |||||
Sbjct 1246 TCCACAGGGTCCATGGTAGAACGGAAGAGATCAGCGCACAGCTCTTCAAAACGAGCACGA 1305
Query 7265 GTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGT 7324
|| ||| || ||||| |||| || || | | ||| || |||||||| | | ||
Sbjct 1306 GTGATGTTAGTGTAGAAGTCAATACCCTCAAACAGCGAGTCGATTTCAATTGAAGCCTGA 1365
Query 7325 GCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCA 7384
| | |||||| | || ||||| || ||||| || || || || | |||||| ||||||
Sbjct 1366 GATGACGAAGAGAGGGTACGCTTGGCACGCTCGCAAGCGGTGCGGAGACGACGGAGGGCA 1425
Query 7385 CGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGA 7444
|| |||||| | | ||||||||| || || ||||| || || | |||||
Sbjct 1426 CGAGGGTTAGTGTTGAGATCTTTCTTGTGCTTGCGTTTGAATTCGGCGACAAAGTGGTTG 1485
Query 7445 AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACT 7504
| | || || || ||||| || || | || ||||| || || || | || |||
Sbjct 1486 ACCATTCGGTTGTCAAAGTCTTCTCCTCCAAGATGAGTATCACCAGCAGTAGACTTTACT 1545
Query 7505 TCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCA 7564
|| || || || | || || | | | || ||||| || |||||||| || || ||
Sbjct 1546 TCGAAAATTCCATCCTCGATAGTCAGGATAGAGACATCGAAGGTACCACCTCCGAGATCG 1605
Query 7565 AAAATGAGTACGTT-CG-TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCG 7622
||||| || ||||| || | || | ||| ||||| ||||||||||| |||||||| |
Sbjct 1606 AAAATAAGGACGTTGCGCTCTCCTTGTC--CCTTCTTGTCGAGACCGTAGGCGATAGCAG 1663
Query 7623 CCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTT 7682
| || || ||||| || ||||| |||||| |||| || | || | | |||||||
Sbjct 1664 CTGCAGTGGGTTCGTTGATAATTCGAAGAACATTCATTCCTGAGATGGCACCGGCATCTT 1723
Query 7683 TCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738
| || || || ||||| || || || ||||| || ||||| || | ||| || |||
Sbjct 1724 TGGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGGACAGTGATGACAGCATCC 1779
>seq84433
Length=1073
Score = 181 bits (200), Expect = 1e-40
Identities = 263/369 (71%), Gaps = 3/369 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| ||||||||||| |||||||| || || || || || ||||| || | |||
Sbjct 788 TCAAAATCTTCACCTCCCAAGTGGGTGTCTCCGTTAGTGGCCAATACTTCGAATACACCG 729
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||| | | || || |||||||| |||||||| |||| ||| || | ||| | |
Sbjct 728 TTGTCGATGGTAAGCATAGACACATCAAAGGTACCACCTCCCAAGTCGAATACGAGGATG 669
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || || ||| ||||| || |||||||| |||||||| || || ||||| ||
Sbjct 668 TTGCGCTC-TC--CTTCCTTCTTGTCAAGACCGTAGGCGATAGCGGCTGCAGTTGGCTCG 612
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| ||||| || | | || || ||||| || ||| | || || || || ||||| |||
Sbjct 611 TTGATAATTCGTACAACATTAAGTCCAGCGATGGTTCCGGCGTCCTTGGTGGCTTGACGT 552
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| | |||||| |||||||| || || ||||| || |||| | |||| ||| || |||
Sbjct 551 TGGGCATCGTTGAAGTAGGCAGGAACAGTTACTACAGCGTGTTTCACTTCCTTTCCAAGA 492
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || || || || ||||| || |||||||| | ||||| ||||| | |
Sbjct 491 TAGGACTCGGCAATTTCCTTCATCTTTCCGAGAACCATAGCCGAAATTTCTTCGGGTGTG 432
Query 7817 AACTGTTTC 7825
|||||||||
Sbjct 431 AACTGTTTC 423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633804499140400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |