Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq21886 268 1e-66 seq84433 181 1e-40 >seq21886 Length=2983 Score = 268 bits (296), Expect = 1e-66 Identities = 671/1016 (66%), Gaps = 4/1016 (0%) Strand=Plus/Plus Query 6725 AACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAAT 6784 || ||||| | |||||| ||| || | || || | ||||| || | | ||||| Sbjct 766 AATCTTACCTCAATTTGAGGTACTCCACGAGGCGCTGGCGGAATTCCAGACAGCTCAAAC 825 Query 6785 GTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTC 6844 | ||||| | | |||| ||| | | | | ||| || |||||| |||| | || Sbjct 826 TTTCCAAGGAGATTGTTGTCCTTGGTCATAGCACGCTCTCCTTCAAAGACCTGGATAAGT 885 Query 6845 ACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTC 6904 || ||||||| || || ||| | ||| | || |||| | || || ||| Sbjct 886 ACGCCAGGTTGGTTGTCGGAATACGTGGTGAATGTCTGGCTGGTCTTGGTGGGGATGGTC 945 Query 6905 GTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGA 6964 || || ||| || | | |||||| | ||| || || |||| ||||| || ||| Sbjct 946 GTGTTCCTCTTGATTAGAGCGGTCATCACACCTCCGGCGGTCTCGATACCAAGCGAAAGA 1005 Query 6965 GGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATG 7024 || | || || | || | || ||||| |||| ||| | ||||| | | ||| Sbjct 1006 GGAGCAACATCGAGAAGCAGGAGATCTTGCACAGCTTCTGACTTGTCACCGGAAAGGATA 1065 Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 || ||||| || | ||| ||||| ||||| || ||||||||||| || | || |||||| Sbjct 1066 GCAGCTTGCACAGCCGCACCGTAGGCGACAGCTTCATCGGGGTTGATGGACTTGTTCAGT 1125 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 || || || ||| |||||| | | | ||| | || ||||| || || || || Sbjct 1126 TCCTTTCCAGAGAAAAGATCCGAAAGGAGCTTTTGCACCTTAGGGATACGAGTGGAACCT 1185 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204 |||||||| || || |||| | | || || || || | || | || | || Sbjct 1186 CCGACCAAGACAATATCATGGATCTGACTCTTGTCCATTTTAGCATCCCTCAGAGACTTC 1245 Query 7205 TCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGG 7264 || ||||| ||||| |||||| | || ||||| || |||||||| ||||| Sbjct 1246 TCCACAGGGTCCATGGTAGAACGGAAGAGATCAGCGCACAGCTCTTCAAAACGAGCACGA 1305 Query 7265 GTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGT 7324 || ||| || ||||| |||| || || | | ||| || |||||||| | | || Sbjct 1306 GTGATGTTAGTGTAGAAGTCAATACCCTCAAACAGCGAGTCGATTTCAATTGAAGCCTGA 1365 Query 7325 GCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCA 7384 | | |||||| | || ||||| || ||||| || || || || | |||||| |||||| Sbjct 1366 GATGACGAAGAGAGGGTACGCTTGGCACGCTCGCAAGCGGTGCGGAGACGACGGAGGGCA 1425 Query 7385 CGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGA 7444 || |||||| | | ||||||||| || || ||||| || || | ||||| Sbjct 1426 CGAGGGTTAGTGTTGAGATCTTTCTTGTGCTTGCGTTTGAATTCGGCGACAAAGTGGTTG 1485 Query 7445 AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACT 7504 | | || || || ||||| || || | || ||||| || || || | || ||| Sbjct 1486 ACCATTCGGTTGTCAAAGTCTTCTCCTCCAAGATGAGTATCACCAGCAGTAGACTTTACT 1545 Query 7505 TCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCA 7564 || || || || | || || | | | || ||||| || |||||||| || || || Sbjct 1546 TCGAAAATTCCATCCTCGATAGTCAGGATAGAGACATCGAAGGTACCACCTCCGAGATCG 1605 Query 7565 AAAATGAGTACGTT-CG-TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCG 7622 ||||| || ||||| || | || | ||| ||||| ||||||||||| |||||||| | Sbjct 1606 AAAATAAGGACGTTGCGCTCTCCTTGTC--CCTTCTTGTCGAGACCGTAGGCGATAGCAG 1663 Query 7623 CCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTT 7682 | || || ||||| || ||||| |||||| |||| || | || | | ||||||| Sbjct 1664 CTGCAGTGGGTTCGTTGATAATTCGAAGAACATTCATTCCTGAGATGGCACCGGCATCTT 1723 Query 7683 TCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738 | || || || ||||| || || || ||||| || ||||| || | ||| || ||| Sbjct 1724 TGGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGGACAGTGATGACAGCATCC 1779 >seq84433 Length=1073 Score = 181 bits (200), Expect = 1e-40 Identities = 263/369 (71%), Gaps = 3/369 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||||||||| |||||||| || || || || || ||||| || | ||| Sbjct 788 TCAAAATCTTCACCTCCCAAGTGGGTGTCTCCGTTAGTGGCCAATACTTCGAATACACCG 729 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | || || |||||||| |||||||| |||| ||| || | ||| | | Sbjct 728 TTGTCGATGGTAAGCATAGACACATCAAAGGTACCACCTCCCAAGTCGAATACGAGGATG 669 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || || ||| ||||| || |||||||| |||||||| || || ||||| || Sbjct 668 TTGCGCTC-TC--CTTCCTTCTTGTCAAGACCGTAGGCGATAGCGGCTGCAGTTGGCTCG 612 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || ||||| || | | || || ||||| || ||| | || || || || ||||| ||| Sbjct 611 TTGATAATTCGTACAACATTAAGTCCAGCGATGGTTCCGGCGTCCTTGGTGGCTTGACGT 552 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | |||||| |||||||| || || ||||| || |||| | |||| ||| || ||| Sbjct 551 TGGGCATCGTTGAAGTAGGCAGGAACAGTTACTACAGCGTGTTTCACTTCCTTTCCAAGA 492 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || || || ||||| || |||||||| | ||||| ||||| | | Sbjct 491 TAGGACTCGGCAATTTCCTTCATCTTTCCGAGAACCATAGCCGAAATTTCTTCGGGTGTG 432 Query 7817 AACTGTTTC 7825 ||||||||| Sbjct 431 AACTGTTTC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633804499140400