Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq76979 93.3 5e-14
seq1226 84.2 3e-11
seq23593 82.4 9e-11
>seq76979
Length=1169
Score = 93.3 bits (102), Expect = 5e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 109726 AATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCA 109785
|| || |||| |||| | |||| ||||||||| |||||||| || | | |||
Sbjct 1065 AAGTCGCCAGAAAGTACCCTTCGGCTGTAGATGTTGAAAGTGTAGGGCTCAATGGATTCA 1006
Query 109786 TTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTT 109845
|||||||| |||||||| || || |||||||| ||||| || |||| |||||| |||||
Sbjct 1005 TTGTTGCCAAGGATTTGGGCCGTAGAAGCTGTTGGCATCGGTGCCACGAGAAGGCTGTTG 946
Query 109846 CGGA 109849
||||
Sbjct 945 CGGA 942
>seq1226
Length=10928
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 119217 ACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATAAAGTCAAAA 119276
||| |||| ||||| || |||||||| ||||||| ||||| |||||||| ||||| |||
Sbjct 630 ACCTTCTTCTCGAAAAAGTTCGTCTTTCCATCGATCGAGATATTTTCCATGAAGTCGAAA 571
Query 119277 GGATTTTTGGAGTT 119290
||||||||||| ||
Sbjct 570 GGATTTTTGGACTT 557
>seq23593
Length=2850
Score = 82.4 bits (90), Expect = 9e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 11806 ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCA 11865
|||||||||||||| | |||||||||| | ||| |||||| ||||| ||||| ||||||
Sbjct 2136 ATGAAGGGAACATTTGCCTCACCAGCGGTTGCTTTAGCGAGAAGAGTTTTACCAGTACCA 2077
Query 11866 GGTGCACCAG 11875
|||| |||||
Sbjct 2076 GGTGGACCAG 2067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587744230318000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |