Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq76979 93.3 5e-14 seq1226 84.2 3e-11 seq23593 82.4 9e-11 >seq76979 Length=1169 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 109726 AATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCA 109785 || || |||| |||| | |||| ||||||||| |||||||| || | | ||| Sbjct 1065 AAGTCGCCAGAAAGTACCCTTCGGCTGTAGATGTTGAAAGTGTAGGGCTCAATGGATTCA 1006 Query 109786 TTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTT 109845 |||||||| |||||||| || || |||||||| ||||| || |||| |||||| ||||| Sbjct 1005 TTGTTGCCAAGGATTTGGGCCGTAGAAGCTGTTGGCATCGGTGCCACGAGAAGGCTGTTG 946 Query 109846 CGGA 109849 |||| Sbjct 945 CGGA 942 >seq1226 Length=10928 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 119217 ACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATAAAGTCAAAA 119276 ||| |||| ||||| || |||||||| ||||||| ||||| |||||||| ||||| ||| Sbjct 630 ACCTTCTTCTCGAAAAAGTTCGTCTTTCCATCGATCGAGATATTTTCCATGAAGTCGAAA 571 Query 119277 GGATTTTTGGAGTT 119290 ||||||||||| || Sbjct 570 GGATTTTTGGACTT 557 >seq23593 Length=2850 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 11806 ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCA 11865 |||||||||||||| | |||||||||| | ||| |||||| ||||| ||||| |||||| Sbjct 2136 ATGAAGGGAACATTTGCCTCACCAGCGGTTGCTTTAGCGAGAAGAGTTTTACCAGTACCA 2077 Query 11866 GGTGCACCAG 11875 |||| ||||| Sbjct 2076 GGTGGACCAG 2067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587744230318000