Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 159 8e-34
seq51722 159 8e-34
seq52966 118 2e-21
seq48601 118 2e-21
seq133353 113 1e-19
seq75105 113 1e-19
seq150799 102 2e-16
>seq54088
Length=1574
Score = 159 bits (176), Expect = 8e-34
Identities = 162/211 (77%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||||||||| || ||||| ||||| ||||| || |||| | || | || || ||
Sbjct 187 AACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTC 246
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||| ||||| || || ||||| ||||| || || || |||||||| || || || |||||
Sbjct 247 GAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTG 306
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| || |||||||| |||||||| || ||||| ||||| | ||||||
Sbjct 307 AATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTT 366
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||| |||||||| || || || | |||||||
Sbjct 367 TCCAGTCAAAGTCTTGACAAAAATTTGCATT 397
>seq51722
Length=1631
Score = 159 bits (176), Expect = 8e-34
Identities = 162/211 (77%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||||||||| || ||||| ||||| ||||| || |||| | || | || || ||
Sbjct 185 AACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTC 244
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||| ||||| || || ||||| ||||| || || || |||||||| || || || |||||
Sbjct 245 GAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTG 304
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| || |||||||| |||||||| || ||||| ||||| | ||||||
Sbjct 305 AATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTT 364
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||| |||||||| || || || | |||||||
Sbjct 365 TCCAGTCAAAGTCTTGACAAAAATTTGCATT 395
Score = 122 bits (134), Expect = 2e-22
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| ||||| |||||||| || ||||||||||| || || || || |||||||||||
Sbjct 1142 CTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTT 1201
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| ||| || || ||||| || ||||| ||| ||||||||||||| || || || ||
Sbjct 1202 TGCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGT 1261
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
| ||| || ||||| | |||||||
Sbjct 1262 GAGAGTCTTGACGAATATTTGCATT 1286
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| |||||| || || | || |||||| ||||||||||| |||||||| || || || ||
Sbjct 843 CTAACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTT 902
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||||||||||| ||||| || || ||||| || || | || ||||| ||
Sbjct 903 GGCTTTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGT 962
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
| ||| || || || | ||||||
Sbjct 963 AAGAGTCTTCACAAAGATCTGCATT 987
>seq52966
Length=1601
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| ||||||||||| ||||| |||||||||||||| || ||||||||||| || ||
Sbjct 1125 TACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAG 1066
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
||| || || || || ||||||||| || || || ||||||| ||||| || || |
Sbjct 1065 CCTTCACATTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAA 1006
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
|||||| || || | |||||||
Sbjct 1005 GAGTTTTCACAAAGATTTGCATT 983
>seq48601
Length=1711
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| ||| ||||||||||| ||||| |||||||| || |||||||| ||||| || |||||
Sbjct 245 CTCACCGGCGAAGATAAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 186
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| ||||| || |||||||| || ||| || || ||||| | ||||| || ||
Sbjct 185 GGCCTTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGT 126
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
|| ||||| ||||| | |||||||
Sbjct 125 CAGTGTTTTGACGAAAATTTGCATT 101
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || ||||| || ||||| || || |||||||| ||||| |||||||| || ||
Sbjct 1389 CTTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTT 1330
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || |||||||||||||||||| ||| ||||| ||||||| || || |||||
Sbjct 1329 AGCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGT 1270
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
|| || || || || | ||||||
Sbjct 1269 CAGTGTCTTCACAAAGATCTGCATT 1245
Score = 111 bits (122), Expect = 3e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 195022 TGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081
|| |||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1711 TGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCAATGGTGTCT 1652
Query 195082 GAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || ||||| | ||| | |||||||| |||||||| || ||||| | ||||||
Sbjct 1651 GAAGCCTCAACTTCCAAGGTGATAGTCTTTCCAGTCAAAGTCTTCACGAAGATTTGCAT 1593
Score = 100 bits (110), Expect = 6e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || |||||||||||||| || || || ||||| || || ||||||||||| ||
Sbjct 541 CTTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTT 482
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|| || || || || || || ||| || ||||| || || | |||||||||||
Sbjct 481 AGCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGT 422
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
||| || || ||||| | ||||||
Sbjct 421 CAACGTCTTCACGAAGATCTGCATT 397
>seq133353
Length=689
Score = 113 bits (124), Expect = 1e-19
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| ||| || ||||||||||| || || || || ||||||||||| || || ||||||||
Sbjct 255 CTCACCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTT 314
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| ||||||||||| ||||| || ||| ||||| | || | |||||||| ||
Sbjct 315 GGCCTTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGT 374
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
|| ||| || ||||| | |||||||
Sbjct 375 CAGAGTCTTCACGAAGATTTGCATT 399
Score = 100 bits (110), Expect = 6e-16
Identities = 75/88 (85%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || || |||||||| ||||| |||||||| ||||||||||||||||| |||||
Sbjct 595 CTTACCCGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTT 654
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAA 195084
|| ||||||||||||||||| |||
Sbjct 655 AGCTTTCACGTTCTCAATGGTGTCTGAA 682
>seq75105
Length=1195
Score = 113 bits (124), Expect = 1e-19
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| ||| || ||||||||||| || || || || ||||||||||| || || ||||||||
Sbjct 436 CTCACCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTT 377
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| ||||||||||| ||||| || ||| ||||| | || | |||||||| ||
Sbjct 376 GGCCTTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGT 317
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
|| ||| || ||||| | |||||||
Sbjct 316 CAGAGTCTTCACGAAGATTTGCATT 292
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || ||||| || | || || ||||| ||||| ||||| |||||||| || |||
Sbjct 739 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTT 680
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || |||||||| ||||||||| ||||||||||| || | |||||||| |||
Sbjct 679 GCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGTC 620
Query 195118 AAAGTTTTTACGAACACTTGCATT 195141
| || || || || | |||||||
Sbjct 619 AGCGTCTTCACAAAGATTTGCATT 596
Score = 100 bits (110), Expect = 6e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| ||| ||||||||||||| |||||||| || ||||||||||| ||||| || || ||
Sbjct 1059 CTAACCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 1000
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|| || ||||||||||| || ||| || || || | ||| | || || || ||
Sbjct 999 GGCTTTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGT 940
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
||| ||||| ||||| | ||||||
Sbjct 939 CAATGTTTTCACGAAAATCTGCATT 915
Score = 96.9 bits (106), Expect = 8e-15
Identities = 74/88 (84%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || || |||||||| || || |||||||| ||||||||||||||||| |||||
Sbjct 95 CTTACCCGCAAAAATAAGTCGCTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTT 36
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAA 195084
|| ||||||||||||||||| |||
Sbjct 35 AGCTTTCACGTTCTCAATGGTGTCTGAA 8
>seq150799
Length=584
Score = 102 bits (112), Expect = 2e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || ||||| || | || || ||||| ||||| ||||| |||||||| || |||
Sbjct 128 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTT 69
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || |||||||| ||||||||| |||||||||||||| | |||||||| |||
Sbjct 68 GCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGGGTGATGGTCTTTCCAGTC 9
Query 195118 A 195118
|
Sbjct 8 A 8
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| ||| ||||||||||||| || ||||| || ||||||||||| ||||| || || ||
Sbjct 448 CTAACCGGCGAAGATAAGTCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 389
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|| || ||||||||||| || ||| || || || | ||| | || || || ||
Sbjct 388 GGCTTTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGT 329
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
||| ||||| ||||| | ||||||
Sbjct 328 CAATGTTTTCACGAAAATCTGCATT 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1107103249366770
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