Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq54088 159 8e-34 seq51722 159 8e-34 seq52966 118 2e-21 seq48601 118 2e-21 seq133353 113 1e-19 seq75105 113 1e-19 seq150799 102 2e-16 >seq54088 Length=1574 Score = 159 bits (176), Expect = 8e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || ||||| ||||| ||||| || |||| | || | || || || Sbjct 187 AACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTC 246 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || || ||||| ||||| || || || |||||||| || || || ||||| Sbjct 247 GAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTG 306 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || |||||||| |||||||| || ||||| ||||| | |||||| Sbjct 307 AATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTT 366 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| |||||||| || || || | ||||||| Sbjct 367 TCCAGTCAAAGTCTTGACAAAAATTTGCATT 397 >seq51722 Length=1631 Score = 159 bits (176), Expect = 8e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || ||||| ||||| ||||| || |||| | || | || || || Sbjct 185 AACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTC 244 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || || ||||| ||||| || || || |||||||| || || || ||||| Sbjct 245 GAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTG 304 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || |||||||| |||||||| || ||||| ||||| | |||||| Sbjct 305 AATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTT 364 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| |||||||| || || || | ||||||| Sbjct 365 TCCAGTCAAAGTCTTGACAAAAATTTGCATT 395 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| |||||||| || ||||||||||| || || || || ||||||||||| Sbjct 1142 CTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTT 1201 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || || ||||| || ||||| ||| ||||||||||||| || || || || Sbjct 1202 TGCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGT 1261 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | ||||||| Sbjct 1262 GAGAGTCTTGACGAATATTTGCATT 1286 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || |||||| || || | || |||||| ||||||||||| |||||||| || || || || Sbjct 843 CTAACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTT 902 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||||| ||||| || || ||||| || || | || ||||| || Sbjct 903 GGCTTTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGT 962 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || || || | |||||| Sbjct 963 AAGAGTCTTCACAAAGATCTGCATT 987 >seq52966 Length=1601 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| ||||||||||| ||||| |||||||||||||| || ||||||||||| || || Sbjct 1125 TACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAG 1066 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || || || || ||||||||| || || || ||||||| ||||| || || | Sbjct 1065 CCTTCACATTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAA 1006 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 |||||| || || | ||||||| Sbjct 1005 GAGTTTTCACAAAGATTTGCATT 983 >seq48601 Length=1711 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| ||||||||||| ||||| |||||||| || |||||||| ||||| || ||||| Sbjct 245 CTCACCGGCGAAGATAAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 186 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || |||||||| || ||| || || ||||| | ||||| || || Sbjct 185 GGCCTTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGT 126 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||||| ||||| | ||||||| Sbjct 125 CAGTGTTTTGACGAAAATTTGCATT 101 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| || ||||| || || |||||||| ||||| |||||||| || || Sbjct 1389 CTTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTT 1330 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||||||||||||| ||| ||||| ||||||| || || ||||| Sbjct 1329 AGCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGT 1270 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || || || | |||||| Sbjct 1269 CAGTGTCTTCACAAAGATCTGCATT 1245 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 195022 TGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 1711 TGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCAATGGTGTCT 1652 Query 195082 GAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| | ||| | |||||||| |||||||| || ||||| | |||||| Sbjct 1651 GAAGCCTCAACTTCCAAGGTGATAGTCTTTCCAGTCAAAGTCTTCACGAAGATTTGCAT 1593 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||||||||| || || || ||||| || || ||||||||||| || Sbjct 541 CTTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTT 482 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || || || || || ||| || ||||| || || | ||||||||||| Sbjct 481 AGCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGT 422 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || ||||| | |||||| Sbjct 421 CAACGTCTTCACGAAGATCTGCATT 397 >seq133353 Length=689 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || ||||||||||| || || || || ||||||||||| || || |||||||| Sbjct 255 CTCACCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTT 314 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||||||||| ||||| || ||| ||||| | || | |||||||| || Sbjct 315 GGCCTTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGT 374 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||| || ||||| | ||||||| Sbjct 375 CAGAGTCTTCACGAAGATTTGCATT 399 Score = 100 bits (110), Expect = 6e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || |||||||| ||||| |||||||| ||||||||||||||||| ||||| Sbjct 595 CTTACCCGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTT 654 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAA 195084 || ||||||||||||||||| ||| Sbjct 655 AGCTTTCACGTTCTCAATGGTGTCTGAA 682 >seq75105 Length=1195 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || ||||||||||| || || || || ||||||||||| || || |||||||| Sbjct 436 CTCACCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTT 377 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||||||||| ||||| || ||| ||||| | || | |||||||| || Sbjct 376 GGCCTTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGT 317 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||| || ||||| | ||||||| Sbjct 316 CAGAGTCTTCACGAAGATTTGCATT 292 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || | || || ||||| ||||| ||||| |||||||| || ||| Sbjct 739 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTT 680 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || |||||||| ||||||||| ||||||||||| || | |||||||| ||| Sbjct 679 GCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGTC 620 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||||| Sbjct 619 AGCGTCTTCACAAAGATTTGCATT 596 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| ||||||||||||| |||||||| || ||||||||||| ||||| || || || Sbjct 1059 CTAACCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 1000 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||||||||| || ||| || || || | ||| | || || || || Sbjct 999 GGCTTTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGT 940 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| ||||| | |||||| Sbjct 939 CAATGTTTTCACGAAAATCTGCATT 915 Score = 96.9 bits (106), Expect = 8e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || |||||||| || || |||||||| ||||||||||||||||| ||||| Sbjct 95 CTTACCCGCAAAAATAAGTCGCTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTT 36 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAA 195084 || ||||||||||||||||| ||| Sbjct 35 AGCTTTCACGTTCTCAATGGTGTCTGAA 8 >seq150799 Length=584 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || | || || ||||| ||||| ||||| |||||||| || ||| Sbjct 128 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTT 69 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || |||||||| ||||||||| |||||||||||||| | |||||||| ||| Sbjct 68 GCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGGGTGATGGTCTTTCCAGTC 9 Query 195118 A 195118 | Sbjct 8 A 8 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| ||||||||||||| || ||||| || ||||||||||| ||||| || || || Sbjct 448 CTAACCGGCGAAGATAAGTCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 389 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||||||||| || ||| || || || | ||| | || || || || Sbjct 388 GGCTTTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGT 329 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| ||||| | |||||| Sbjct 328 CAATGTTTTCACGAAAATCTGCATT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107103249366770