Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq24732 102 9e-17
seq76979 91.5 2e-13
>seq24732
Length=2762
Score = 102 bits (112), Expect = 9e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371
||| || ||||||||||| || || ||||| ||||||||||| || || || || ||
Sbjct 459 ATGTGGGTTAACAATTTGGAAGTCGCCAGACAGTACTCTACGACTGTAGATGTTGAAAGT 400
Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431
|| || || |||||||||||||| |||| |||||| || || || ||||| ||||| |
Sbjct 399 GTAAGGCTCAATAGATTCATTATTGCCAAGAATTTGCGCCGTAGAAGCTGTTGGCATCGG 340
Query 47432 TGCAAC 47437
||| ||
Sbjct 339 TGCCAC 334
>seq76979
Length=1169
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 47313 TGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTA 47372
||||| ||||||||||| || || ||||| ||||| || ||||| || || || ||
Sbjct 1083 TGAGGGTTAACAATTTGGAAGTCGCCAGAAAGTACCCTTCGGCTGTAGATGTTGAAAGTG 1024
Query 47373 TATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGAT 47432
|| || || || |||||||| || |||| ||||| || || || ||||| ||||| | |
Sbjct 1023 TAGGGCTCAATGGATTCATTGTTGCCAAGGATTTGGGCCGTAGAAGCTGTTGGCATCGGT 964
Query 47433 GCAACTAATAAGCTATTTCTTACTCCAT 47460
|| || | | ||| || | |||||||
Sbjct 963 GCCACGAGAAGGCTGTTGCGGACTCCAT 936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560933219708400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |