Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq24732 102 9e-17 seq76979 91.5 2e-13 >seq24732 Length=2762 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| || ||||||||||| || || ||||| ||||||||||| || || || || || Sbjct 459 ATGTGGGTTAACAATTTGGAAGTCGCCAGACAGTACTCTACGACTGTAGATGTTGAAAGT 400 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 || || || |||||||||||||| |||| |||||| || || || ||||| ||||| | Sbjct 399 GTAAGGCTCAATAGATTCATTATTGCCAAGAATTTGCGCCGTAGAAGCTGTTGGCATCGG 340 Query 47432 TGCAAC 47437 ||| || Sbjct 339 TGCCAC 334 >seq76979 Length=1169 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47313 TGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTA 47372 ||||| ||||||||||| || || ||||| ||||| || ||||| || || || || Sbjct 1083 TGAGGGTTAACAATTTGGAAGTCGCCAGAAAGTACCCTTCGGCTGTAGATGTTGAAAGTG 1024 Query 47373 TATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGAT 47432 || || || || |||||||| || |||| ||||| || || || ||||| ||||| | | Sbjct 1023 TAGGGCTCAATGGATTCATTGTTGCCAAGGATTTGGGCCGTAGAAGCTGTTGGCATCGGT 964 Query 47433 GCAACTAATAAGCTATTTCTTACTCCAT 47460 || || | | ||| || | ||||||| Sbjct 963 GCCACGAGAAGGCTGTTGCGGACTCCAT 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560933219708400