Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq84433 111 1e-18 seq21886 105 5e-17 seq51722 98.7 8e-15 seq54088 93.3 3e-13 seq163496 89.7 4e-12 >seq84433 Length=1073 Score = 111 bits (122), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 ||||| || |||| ||| ||||||| |||||||| | || ||||| ||| ||| Sbjct 424 AAACAGTTCACACCCGAAGAAATTTCGGCTATGGTTCTCGGAAAGATGAAGGAAATTGCC 483 Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| || | |||| | ||||| | | || ||| ||||||| || || || || || Sbjct 484 GAGTCCTATC-TTGGAAAGGAAGTGAAACACGCTGTAGTAACTGTTCCTGCCTACTTCAA 542 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 || | ||||||||||| || || || || ||| || ||||||||||||||| | || Sbjct 543 CGATGCCCAACGTCAAGCCACCAAGGACGCCGGAACCATCGCTGGACTTAATGTTGTACG 602 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| || || ||||| || || | || || || ||||| || Sbjct 603 AATTATCAACGAGCCAACTGCAGCCGCTATCGCCTACGGTCTTGACAA 650 >seq21886 Length=2983 Score = 105 bits (116), Expect = 5e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || ||||| || || || || |||||||| |||||||| ||||| ||||| Sbjct 1779 GGATGCTGTCATCACTGTCCCTGCTTACTTCAATGACTCTCAACGTCAGGCTACCAAAGA 1720 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || || | ||| | ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 1719 TGCCGGTGCCATCTCAGGAATGAATGTTCTTCGAATTATCAACGAACCCACTGCAGCTGC 1660 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || || || || || || Sbjct 1659 TATCGCCTACGGTCTCGACAA 1639 >seq51722 Length=1631 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | |||||| ||||| |||||||| ||||||||||| || || || | Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||| |||| || | | ||||||||| | ||||| |||||||| Sbjct 907 TTGACGTTCTCAATTGTGTCAG-ATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAG 965 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| || || || || ||||| Sbjct 966 AGTCTTCACAAAGATCTGCAT 986 Score = 96.9 bits (106), Expect = 3e-14 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 563331 TTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 ||| || |||||||| |||| || ||||| || ||||||||||| ||||| || ||||| Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598 Query 563391 TTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAG 563449 |||||| ||| ||||| || | || | | |||||||||| ||| || |||| Sbjct 599 GGCTTTTACGTTCTCGATTGTGTC-GGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAG 657 Query 563450 TAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| |||||||| || ||||| Sbjct 658 TGAGAGTCTTAACGAAGATCTGCAT 682 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || ||||| ||||| || ||| ||||| ||||| || || | | || | Sbjct 177 AGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGG--ATATTATAGTCGGACAATGTAC 234 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || || ||||| ||||| ||||| || |||| |||||||||||||||||||| | Sbjct 235 GACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCT 294 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGA 563433 | ||||||||||| || || || |||||| || || | | ||| ||| || Sbjct 295 CCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTAC-TTCCAGG 353 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| | ||| || || ||||||||||| Sbjct 354 GTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 394 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || || |||||||||| ||||| || ||||| ||||| || ||||||||||||||| Sbjct 1143 TTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTTT 1202 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 || || ||||| ||||| | || || ||| || |||| ||||| ||||| Sbjct 1203 GCCTTAACATTTTCAATAGTATCCGATGCTTCGAC-TTCAAGGGTAATTGTTTTGCCAGT 1261 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || ||||| |||||||| Sbjct 1262 GAGAGTCTTGACGAATATTTGCAT 1285 >seq54088 Length=1574 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || ||||| ||||| || ||| ||||| ||||| || || | | || | Sbjct 179 AGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGG--ATATTATAGTCGGACAATGTAC 236 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || || ||||| ||||| ||||| || |||| |||||||||||||||||||| | Sbjct 237 GACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCT 296 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGA 563433 | ||||||||||| || || || |||||| || || | | ||| ||| || Sbjct 297 CCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTAC-TTCCAGG 355 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| | ||| || || ||||||||||| Sbjct 356 GTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 396 >seq163496 Length=518 Score = 89.7 bits (98), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||||||||| || ||||| || || || |||||||||||||| |||||||||||||| Sbjct 26 GGTATTCCTCCAGCACCTCGCGGCGTTCCACAAATTGAAGTTACGTTCGATATCGATGCT 85 Query 552567 AATGGAATTTTGAATGT 552583 ||||||||| | || || Sbjct 86 AATGGAATTGTTAACGT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4020447892631900