Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq150301 118 8e-22 seq54088 116 3e-21 seq51722 116 3e-21 seq75105 96.9 3e-15 >seq150301 Length=587 Score = 118 bits (130), Expect = 8e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| ||||| ||||||||||| || || || ||||| || || |||||||| Sbjct 519 CTAACCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTT 460 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| ||| |||| | || || || | |||||| ||||| |||| ||| || || || Sbjct 459 TGCTTTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGT 400 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||||||||| ||||||||| Sbjct 399 AAGCGTTTTTACAAAGATCTGCATG 375 >seq54088 Length=1574 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| | ||||| || || || ||||| ||||| || |||| Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 229 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | |||||| || ||||| |||| ||||| ||||| || ||| Sbjct 230 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 289 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||||||||| || || ||| | || | |||||| |||| || ||| Sbjct 290 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 349 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||| || || || ||||| || ||||| || ||||| Sbjct 350 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| |||| ||||||||||| || ||||| ||||| || || || ||||| Sbjct 539 TTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTTG 598 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| |||| | ||||| || | ||| || || ||||| | || |||| || Sbjct 599 GCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGTG 658 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || ||||||| Sbjct 659 AGAGTCTTAACGAA-GTCTGCAT 680 >seq51722 Length=1631 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| | ||||| || || || ||||| ||||| || |||| Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 227 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | |||||| || ||||| |||| ||||| ||||| || ||| Sbjct 228 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 287 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||||||||| || || ||| | || | |||||| |||| || ||| Sbjct 288 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 347 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||| || || || ||||| || ||||| || ||||| Sbjct 348 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 394 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||||||| ||||| | |||||||| || ||||| ||||||||||| || || || Sbjct 843 CTAACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTT 902 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | || | |||||||| | || ||||| ||||||| ||||| || || Sbjct 903 GGCTTTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGT 962 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 963 AAGAGTCTTCACAAAGATCTGCAT 986 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| |||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 540 TTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTG 599 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | ||||| || | ||| || || ||||| | || ||||| || Sbjct 600 GCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGTG 659 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 660 AGAGTCTTAACGAAGATCTGCAT 682 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || || | ||||| || || || || || || || |||||||||||||| Sbjct 1142 CTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTT 1201 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| |||| | ||| || || | ||| |||||||| || | |||||||| || Sbjct 1202 TGCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGT 1261 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || || ||||| ||||| Sbjct 1262 GAGAGTCTTGACGAATATTTGCAT 1285 >seq75105 Length=1195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| ||||| || ||||| ||||| || ||||| || ||| Sbjct 739 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTT 680 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||||||| | || | |||||| || | |||||||||||||||| || || || || Sbjct 679 GCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGTC 620 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | || || ||||| || ||||| | | |||||| Sbjct 619 AGCGTCTTCACAAAGATTTGCATTCCTCCTCGAAGA 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395470352429670