Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq54088 114 1e-20 seq51722 114 1e-20 seq75105 84.2 2e-11 seq48601 84.2 2e-11 >seq54088 Length=1574 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| ||||| ||||| || || || | | ||| |||| || | ||| Sbjct 194 TGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGC 253 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||||||||| ||||| | |||| |||||||| || |||||| Sbjct 254 TTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTG 313 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || |||||||| || |||| || ||||| ||||| ||| Sbjct 314 GCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTC 373 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||| ||||| Sbjct 374 AAAGTCTTGACAAAAATTTGCAT 396 >seq51722 Length=1631 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| ||||| ||||| || || || | | ||| |||| || | ||| Sbjct 192 TGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGC 251 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||||||||| ||||| | |||| |||||||| || |||||| Sbjct 252 TTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTG 311 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || |||||||| || |||| || ||||| ||||| ||| Sbjct 312 GCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTC 371 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||| ||||| Sbjct 372 AAAGTCTTGACAAAAATTTGCAT 394 >seq75105 Length=1195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || |||||| || || |||| |||||| || | ||||| ||| |||||||| ||||| Sbjct 1059 CTAACCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 1000 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | | || || ||||| ||||||| || || ||||| || || Sbjct 999 GGCTTTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGT 940 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||| || ||||||||||| Sbjct 939 CAATGTTTTCACGAAAATCTGCAT 916 >seq48601 Length=1711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||||||||| || ||||| || ||||| | |||| ||||||||||| |||||| Sbjct 541 CTTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTT 482 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||||||| | | | ||||| ||||| || || | || || || ||||| || Sbjct 481 AGCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGT 422 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || || |||||||| Sbjct 421 CAACGTCTTCACGAAGATCTGCAT 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380160833711130