Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq146581 603 3e-168 >seq146581 Length=609 Score = 603 bits (668), Expect = 3e-168 Identities = 499/609 (82%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 226 GATCTTCAACCTGGCACGATTGAATATGAGCGACACCGACTTACGCGAGCTCAGGCTGAC 285 ||||| || || || || ||||| || || || || ||||||||||| || ||||| ||| Sbjct 1 GATCTCCAGCCAGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGAC 60 Query 286 GCTCAGGAATTAAAAAATGCAAAAGAGTCCGCTGAAGTGGTGGAGACCGCATTCTGCACG 345 || |||||| | || ||||| | ||| ||||||||||||||||| ||||||||||| || Sbjct 61 GCACAGGAACTGAAGAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACT 120 Query 346 TTCGTGCTGTCGCGGGTAGCCGGAGAAATCGCCAGCATTCTCGATGGAATACCTCTGTCG 405 ||||||||||||||| | || || ||||| ||||| |||||||| || || || |||||| Sbjct 121 TTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCG 180 Query 406 GTTCAGCGGCGCTTCCCGGAGCTGGAGAACCGACATATTGATTTCCTCAAGAAGGACATC 465 || |||||||| || ||||| ||||| ||||||||| |||||||||| || ||| ||| Sbjct 181 GTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATC 240 Query 466 ATTAAGGCCATGAACAAGGCAGCTGCGCTGGATGAAATGATACCGGGGTTGCTGAGTGAA 525 || || ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| Sbjct 241 ATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAA 300 Query 526 TATATCGAACAGTCAGGTTAAGGGGCTGCAGCACTCTGCGCGGGCGGGGTTACGTTCGCT 585 ||||||||||||||||||||| |||||| ||| | || || || ||| | || || || Sbjct 301 TATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACT 360 Query 586 GTACCGGCCGCAACCGCAAACAGCAGTTGAATGGGCAGATGAGAATTATTATCTCCCGAA 645 || | ||||| | || || || || ||||||||||| |||| ||||| ||||||||||| Sbjct 361 GTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAA 420 Query 646 AGAGTCTGCCTACCAGGAAGGGCGCTGGGAAACACTGCCATTTCAGCGTGCAATTATGAA 705 ||| || || ||||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct 421 AGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAA 480 Query 706 TGCGATGGGTAATGACTATATTCGCGAGGTGAATGTCGTTAAATCGGCTCGTGTCGGCTA 765 ||||||||| | ||||| || || ||||||||||| || || || || |||||||| || Sbjct 481 TGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTA 540 Query 766 CTCAAAAATGTTGCTCGGCGTTTACGCATATTTCATCCAACATAAACAGCGTAACTCCCT 825 || |||||| |||| || ||||| || || || || | ||||| ||||| ||| |||| Sbjct 541 TTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCT 600 Query 826 AATATGGTT 834 || ||||| Sbjct 601 TATCTGGTT 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141596515108140