Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq146581 1090 0.0 >seq146581 Length=609 Score = 1090 bits (1208), Expect = 0.0 Identities = 607/609 (99%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 226 GATCTCCAGCCAGGAACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGAC 285 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATCTCCAGCCAGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGAC 60 Query 286 GCACAGGAACTGAAGAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACT 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCACAGGAACTGAAGAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACT 120 Query 346 TTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGCTCCCCCTGTCG 405 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 TTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCG 180 Query 406 GTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATC 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATC 240 Query 466 ATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAA 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAA 300 Query 526 TATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACT 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACT 360 Query 586 GTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAA 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAA 420 Query 646 AGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAA 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAA 480 Query 706 TGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTA 765 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTA 540 Query 766 TTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCT 825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCT 600 Query 826 TATCTGGTT 834 ||||||||| Sbjct 601 TATCTGGTT 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150267253735440