Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq84433 143 2e-28 seq51722 114 8e-20 seq54088 109 4e-18 seq48601 96.9 2e-14 seq21886 91.5 1e-12 seq150301 86.0 4e-11 >seq84433 Length=1073 Score = 143 bits (158), Expect = 2e-28 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC- 474705 ||||| || |||| ||| ||||||| | |||||| | | || ||||| ||| || Sbjct 424 AAACAGTTCACACCCGAAGAAATTTCGGCTATGGTTCTCGGAAAGATGAAGGAAATTGCC 483 Query 474706 GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 ||| || ||||||||| | ||||| | | || ||| | |||||||| || || || || Sbjct 484 GAG-TCCTATCTTGGAAAGGAAGTGAAACACGCTGTAGTAACTGTTCCTGCCTACTTCAA 542 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825 ||| | ||||||||||| || || || || |||| || || || ||||||||| |||| Sbjct 543 CGATGCCCAACGTCAAGCCACCAAGGACGCCGGAACCATCGCTGGACTTAATGTTGTACG 602 Query 474826 TATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| || || ||||| |||||||| | || || |||||||| ||||| Sbjct 603 AATTATCAACGAGCCAACTGCAGCCGCTATCGCCTACGGTCTTGACAAGAA 653 >seq51722 Length=1631 Score = 114 bits (126), Expect = 8e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||| |||||||| || || || || ||||| ||||| ||||| |||||||| || Sbjct 1142 CTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTT 1201 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 | || ||| |||||||||||| | || | | |||||||||||| ||||| || | Sbjct 1202 TGCCTTAACATTTTCAATAGTATCCGATGCTTCGA-CTTCAAGGGTAATTGTTTTGCCAG 1260 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 |||||||||| ||||| ||||| Sbjct 1261 TGAGAGTCTTGACGAATATTTG 1282 Score = 109 bits (120), Expect = 4e-18 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||||||||| || ||||| ||||| || ||| ||| || | ||||| || | | Sbjct 173 ACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATA--TTATAGTCGGACAAT 230 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | || || ||||||||||||||||| || || || || ||||||||||||||| Sbjct 231 GTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATT 290 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 || ||||| ||||||||||| || ||| |||||||| || | | | | ||| Sbjct 291 CCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTA-CTTC 349 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || || | |||||| || |||||||| Sbjct 350 CAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 391 Score = 87.8 bits (96), Expect = 1e-11 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 480620 TTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTC 480679 |||||| | || ||||||||||| || || |||||||| || |||||||||||||| || Sbjct 532 TTCAAGAT--TTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATC 589 Query 480680 TTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAG 480738 || || || ||| || || || || || | || | || || || ||||||| Sbjct 590 CTGGATTTTGGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAA-CCTCGAGAGTAATAG 648 Query 480739 TTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||||||||||||||| || || Sbjct 649 TCTTGCCAGTGAGAGTCTTAACGAAGATCTG 679 >seq54088 Length=1574 Score = 109 bits (120), Expect = 4e-18 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||||||||| || ||||| ||||| || ||| ||| || | ||||| || | | Sbjct 175 ACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATA--TTATAGTCGGACAAT 232 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | || || ||||||||||||||||| || || || || ||||||||||||||| Sbjct 233 GTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATT 292 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 || ||||| ||||||||||| || ||| |||||||| || | | | | ||| Sbjct 293 CCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTA-CTTC 351 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || || | |||||| || |||||||| Sbjct 352 CAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 393 Score = 89.7 bits (98), Expect = 3e-12 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 480620 TTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTC 480679 |||||| | || ||||||||||| || || |||||||| || ||||||||||||||||| Sbjct 531 TTCAAGAT--TTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTC 588 Query 480680 TTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAG 480738 || || || ||| || ||| || || || | || | || || || ||||||| Sbjct 589 CTGGATTTTGGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAA-CCTCGAGAGTAATAG 647 Query 480739 TTTTACCGGTGAGAGTCTTAACGAA 480763 | | || ||||||||||||||||| Sbjct 648 TCCTGCCAGTGAGAGTCTTAACGAA 672 >seq48601 Length=1711 Score = 96.9 bits (106), Expect = 2e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1389 CTTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTT 1330 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 || ||| ||||| || || | | ||| |||||||| ||||| || || Sbjct 1329 AGCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGT 1270 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || Sbjct 1269 CAGTGTCTTCACAAAGATCTG 1249 >seq21886 Length=2983 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || || ||||| || || || || ||||| ||||||||||| || || |||||| Sbjct 1778 GATGCTGTCATCACTGTCCCTGCTTACTTCAATGACTCTCAACGTCAGGCTACCAAAGAT 1719 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || || || |||| | |||||| | || ||||| || ||||| || ||||| || Sbjct 1718 GCCGGTGCCATCTCAGGAATGAATGTTCTTCGAATTATCAACGAACCCACTGCAGCTGCT 1659 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 | || || ||||| || ||||| Sbjct 1658 ATCGCCTACGGTCTCGACAAGAA 1636 >seq150301 Length=587 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | || ||||||||||| || |||||||||||||| ||||| ||| | Sbjct 515 CCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCT 456 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||||| || || || || || || Sbjct 455 TTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGC 396 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 395 GTTTTTACAAAGATCTG 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3261002462311880