Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq146581 621 1e-173 >seq146581 Length=609 Score = 621 bits (688), Expect = 1e-173 Identities = 502/607 (83%), Gaps = 0/607 (0%) Strand=Plus/Plus Query 415 GACCTTCAGCCTGGTACGATTGACTATGAGCGTCACCGCCTCACCCGAGCGCAGGCAGAT 474 || || ||||| || || ||||| || || || || || || || || |||||||| || Sbjct 1 GATCTCCAGCCAGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGAC 60 Query 475 GCCCAGGAACTAAAAAATGCAAAAGATTCCGCTGAGGTGGTGGAAACCGCATTCTGCACG 534 || |||||||| || ||||| | ||| |||||||| |||||||||||||||||||| || Sbjct 61 GCACAGGAACTGAAGAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACT 120 Query 535 TTCGTGCTGTCGCGGATGGCCGGAGAAGTAGCCAGCATTCTTGATGGAGTTCCTCTGTCG 594 ||||||||||||||||| || || ||| | ||||| ||||| || || | || |||||| Sbjct 121 TTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCG 180 Query 595 GTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATC 654 || |||||||| || ||||| ||||||||||||||| |||||||||| || ||| ||| Sbjct 181 GTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATC 240 Query 655 ATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAA 714 || |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| Sbjct 241 ATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAA 300 Query 715 TATATCGAACAGTCAGGTTAAGGGGCTGCAGCACTCTGCGCGCGCGGGTCTACTTTCGCT 774 ||||||||||||||||||||| |||||| ||| | || ||||| || || | || || Sbjct 301 TATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACT 360 Query 775 GTACCGACCTGAGCCGCAAACGGCGGTTGAATGGGCAGACGATAATTACTATCTCCCCAA 834 || | | || ||||| || || || ||||||||||| || | ||||||||||||||| || Sbjct 361 GTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAA 420 Query 835 AGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAA 894 ||| || || ||||||||||||||||||||||| |||| ||||| || || |||||||| Sbjct 421 AGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAA 480 Query 895 TGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTA 954 ||||||||| | ||| ||||| |||||||| || || || |||||||||||||| || || Sbjct 481 TGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTA 540 Query 955 TTCAAAAATGTTGCTGGGTGTTTATGCGTATTTTATTCAGCACAAGCAGCGAAATTCCCT 1014 ||| |||||| |||||||||||||||| || ||||| |||| |||||||| || |||| Sbjct 541 TTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCT 600 Query 1015 TATCTGG 1021 ||||||| Sbjct 601 TATCTGG 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147265230048640