Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq51722 100 4e-16
seq48601 98.7 1e-15
seq54088 96.9 5e-15
seq75105 86.0 9e-12
>seq51722
Length=1631
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | || || | ||||||||||| || || | ||||| || | ||
Sbjct 987 AATGCAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATC 928
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | ||| ||||| ||| || || || ||||||||||| || |||||||| ||
Sbjct 927 TGACACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCA 868
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
|||||||||||||| ||| ||| ||
Sbjct 867 ACAAAGATTGATTTTTGCAGGTTAG 843
Score = 96.9 bits (106), Expect = 5e-15
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || ||||||||||| || || || | ||||| || | ||
Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | |||| || ||||| || || |||||||| || || || ||||| || ||
Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 276
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || |||| | ||| || ||||| ||||| || | || || || || ||||
Sbjct 275 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATA- 217
Query 156002 TATATCCAAA--GAGGCGACGCTTCA 156025
||||||||| ||| | ||||||||
Sbjct 216 -ATATCCAAAAGGAGTCAACGCTTCA 192
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||||||||| | || || | ||||| ||||| ||||| | |||||||||| ||
Sbjct 1286 AATGCAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATC 1227
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| |||| ||| || || ||||| |||||||| || || || |||||||| ||
Sbjct 1226 GGATACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCA 1167
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
|| || | |||| || ||||||
Sbjct 1166 GCAGCGACTTATTTTCGCTGGTAAG 1142
>seq48601
Length=1711
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||||||||| ||||| || || ||||| || | |||
Sbjct 1593 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCTTGGAAGTTGAGGCTTCA 1652
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| ||||||||| |||||| ||||| ||||||||||| |||||||| ||
Sbjct 1653 GACACCATTGAGAACGTGAAAGCTAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCA 1711
Score = 86.0 bits (94), Expect = 9e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | ||||| ||||||||||| || || || || ||||| |||| |||
Sbjct 881 AATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACCATCACTTTGGAAGTTGAAGCTTC 940
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | || ||||| || ||| || || ||||| ||||| || || || || ||
Sbjct 941 TGACACGATCGAGAACGTAAAGGCTAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCA 1000
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
||| | |||||| ||| ||||||
Sbjct 1001 GCAACGTCTGATTTTTGCTGGTAAG 1025
>seq54088
Length=1574
Score = 96.9 bits (106), Expect = 5e-15
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || ||||||||||| || || || | ||||| || | ||
Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | |||| || ||||| || || |||||||| || || || ||||| || ||
Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 278
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || |||| | ||| || ||||| ||||| || | || || || || ||||
Sbjct 277 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATA- 219
Query 156002 TATATCCAAA--GAGGCGACGCTTCA 156025
||||||||| ||| | ||||||||
Sbjct 218 -ATATCCAAAAGGAGTCAACGCTTCA 194
>seq75105
Length=1195
Score = 86.0 bits (94), Expect = 9e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | |||||||||||||| ||||| || || || || || || | |||
Sbjct 915 AATGCAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTC 974
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| || |||||| || || || || || |||||||| || || || ||
Sbjct 975 TGATACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 1034
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
||| ||| | || | |||||| ||
Sbjct 1035 ACAGAGACTTATCTTCGCCGGTTAG 1059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 730341381196000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |