Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq51722 100 4e-16 seq48601 98.7 1e-15 seq54088 96.9 5e-15 seq75105 86.0 9e-12 >seq51722 Length=1631 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || | ||||||||||| || || | ||||| || | || Sbjct 987 AATGCAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATC 928 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| ||| || || || ||||||||||| || |||||||| || Sbjct 927 TGACACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCA 868 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 |||||||||||||| ||| ||| || Sbjct 867 ACAAAGATTGATTTTTGCAGGTTAG 843 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||||||||| || || || | ||||| || | || Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| || ||||| || || |||||||| || || || ||||| || || Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 276 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||| || ||||| ||||| || | || || || || |||| Sbjct 275 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATA- 217 Query 156002 TATATCCAAA--GAGGCGACGCTTCA 156025 ||||||||| ||| | |||||||| Sbjct 216 -ATATCCAAAAGGAGTCAACGCTTCA 192 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| | || || | ||||| ||||| ||||| | |||||||||| || Sbjct 1286 AATGCAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATC 1227 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||| || || ||||| |||||||| || || || |||||||| || Sbjct 1226 GGATACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCA 1167 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 || || | |||| || |||||| Sbjct 1166 GCAGCGACTTATTTTCGCTGGTAAG 1142 >seq48601 Length=1711 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| ||||| || || ||||| || | ||| Sbjct 1593 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCTTGGAAGTTGAGGCTTCA 1652 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||||||| |||||| ||||| ||||||||||| |||||||| || Sbjct 1653 GACACCATTGAGAACGTGAAAGCTAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCA 1711 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| ||||||||||| || || || || ||||| |||| ||| Sbjct 881 AATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACCATCACTTTGGAAGTTGAAGCTTC 940 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||||| || ||| || || ||||| ||||| || || || || || Sbjct 941 TGACACGATCGAGAACGTAAAGGCTAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCA 1000 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| | |||||| ||| |||||| Sbjct 1001 GCAACGTCTGATTTTTGCTGGTAAG 1025 >seq54088 Length=1574 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||||||||| || || || | ||||| || | || Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| || ||||| || || |||||||| || || || ||||| || || Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 278 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||| || ||||| ||||| || | || || || || |||| Sbjct 277 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATA- 219 Query 156002 TATATCCAAA--GAGGCGACGCTTCA 156025 ||||||||| ||| | |||||||| Sbjct 218 -ATATCCAAAAGGAGTCAACGCTTCA 194 >seq75105 Length=1195 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | |||||||||||||| ||||| || || || || || || | ||| Sbjct 915 AATGCAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTC 974 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || |||||| || || || || || |||||||| || || || || Sbjct 975 TGATACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 1034 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| ||| | || | |||||| || Sbjct 1035 ACAGAGACTTATCTTCGCCGGTTAG 1059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730341381196000