Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 111 3e-19
seq51722 111 3e-19
seq150301 96.9 7e-15
seq48601 89.7 1e-12
>seq54088
Length=1574
Score = 111 bits (122), Expect = 3e-19
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||||||||| || || ||||| || | || || | ||| || ||||||||||| | ||
Sbjct 214 GATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCG 273
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| |||||||| || ||||| || |||||||| || || || ||||| ||||
Sbjct 274 CTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGT 333
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| |||| |||||||| || || || || || ||||| || || || | ||| || ||
Sbjct 334 GTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 393
Query 192534 CATT 192537
||||
Sbjct 394 CATT 397
>seq51722
Length=1631
Score = 111 bits (122), Expect = 3e-19
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||||||||| || || ||||| || | || || | ||| || ||||||||||| | ||
Sbjct 212 GATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCG 271
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| |||||||| || ||||| || |||||||| || || || ||||| ||||
Sbjct 272 CTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGT 331
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| |||| |||||||| || || || || || ||||| || || || | ||| || ||
Sbjct 332 GTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 391
Query 192534 CATT 192537
||||
Sbjct 392 CATT 395
Score = 100 bits (110), Expect = 6e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452
|||||||||||| || | || ||||||||| ||||| |||||||| ||||| || |||||
Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598
Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512
|||||| || || | || || | ||| || || |||||||| || || |||||
Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658
Query 192513 TAATGTTTTAATAAATATCTGCATT 192537
| || |||| || |||||||||
Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683
>seq150301
Length=587
Score = 96.9 bits (106), Expect = 7e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455
||||||||| || |||| ||||||||||||||| |||||||| || || || |||||
Sbjct 516 ACCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGC 457
Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515
||| ||||| || | ||| || | ||| || || || || || || || ||||| |
Sbjct 456 TTTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAG 397
Query 192516 TGTTTTAATAAATATCTGCAT 192536
||||| | ||| ||||||||
Sbjct 396 CGTTTTTACAAAGATCTGCAT 376
>seq48601
Length=1711
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
|||||||||||||| | | || |||||||| || |||||||| || ||||| || |||
Sbjct 1388 TTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTA 1329
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| || | || || | ||| ||||| || ||||| ||||| || ||
Sbjct 1328 GCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGTC 1269
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
| ||| || | ||| |||||||||
Sbjct 1268 AGTGTCTTCACAAAGATCTGCATT 1245
Score = 84.2 bits (92), Expect = 4e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| |||||||| | || || ||||||||||| || || || || ||||| || |||
Sbjct 540 TTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTTA 481
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||||||||| || | |||||| | || ||||| || || || || || || ||
Sbjct 480 GCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGTC 421
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
|| || || | || |||||||||
Sbjct 420 AACGTCTTCACGAAGATCTGCATT 397
Score = 84.2 bits (92), Expect = 4e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || | | || |||||||| || |||||||| ||||| || || |||
Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||||| || || | || || | ||| ||||| | ||| ||||| || |||||
Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
|| ||||| | || |||||||||
Sbjct 904 AACGTTTTCACGAAGATCTGCATT 881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982369610218500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |