Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq54088 111 3e-19 seq51722 111 3e-19 seq150301 96.9 7e-15 seq48601 89.7 1e-12 >seq54088 Length=1574 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||| || || ||||| || | || || | ||| || ||||||||||| | || Sbjct 214 GATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCG 273 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || ||||| || |||||||| || || || ||||| |||| Sbjct 274 CTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGT 333 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || |||| |||||||| || || || || || ||||| || || || | ||| || || Sbjct 334 GTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 393 Query 192534 CATT 192537 |||| Sbjct 394 CATT 397 >seq51722 Length=1631 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||| || || ||||| || | || || | ||| || ||||||||||| | || Sbjct 212 GATATTATAGTCGGACAATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCG 271 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || ||||| || |||||||| || || || ||||| |||| Sbjct 272 CTGCTGATCAGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGT 331 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || |||| |||||||| || || || || || ||||| || || || | ||| || || Sbjct 332 GTCCGACGCCTCTACTTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTG 391 Query 192534 CATT 192537 |||| Sbjct 392 CATT 395 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||||||| || | || ||||||||| ||||| |||||||| ||||| || ||||| Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 |||||| || || | || || | ||| || || |||||||| || || ||||| Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658 Query 192513 TAATGTTTTAATAAATATCTGCATT 192537 | || |||| || ||||||||| Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683 >seq150301 Length=587 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||||||||| || |||| ||||||||||||||| |||||||| || || || ||||| Sbjct 516 ACCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGC 457 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| ||||| || | ||| || | ||| || || || || || || || ||||| | Sbjct 456 TTTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAG 397 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||| | ||| |||||||| Sbjct 396 CGTTTTTACAAAGATCTGCAT 376 >seq48601 Length=1711 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| | | || |||||||| || |||||||| || ||||| || ||| Sbjct 1388 TTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTA 1329 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | || || | ||| ||||| || ||||| ||||| || || Sbjct 1328 GCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGTC 1269 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | ||| || | ||| ||||||||| Sbjct 1268 AGTGTCTTCACAAAGATCTGCATT 1245 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||| | || || ||||||||||| || || || || ||||| || ||| Sbjct 540 TTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTTA 481 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||||||| || | |||||| | || ||||| || || || || || || || Sbjct 480 GCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGTC 421 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 || || || | || ||||||||| Sbjct 420 AACGTCTTCACGAAGATCTGCATT 397 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | || |||||||| || |||||||| ||||| || || ||| Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||| || || | || || | ||| ||||| | ||| ||||| || ||||| Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 || ||||| | || ||||||||| Sbjct 904 AACGTTTTCACGAAGATCTGCATT 881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982369610218500