Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq51722 109 1e-18 seq150301 96.9 6e-15 seq48601 93.3 8e-14 seq54088 91.5 3e-13 >seq51722 Length=1631 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||||||||||||||| | || |||||| || ||||| |||||||| ||||| || ||||| Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 |||||| || || || || || | ||| || || |||||||| || || ||||| Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658 Query 172046 TAATGTTTTAATGAATATCTGCATT 172070 | || |||| ||| ||||||||| Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683 >seq150301 Length=587 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 |||||||||||| |||| |||||| |||||||| |||||||| || || || ||||| Sbjct 516 ACCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGC 457 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| ||||| || ||||| || | ||| || || || || || || || ||||| | Sbjct 456 TTTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAG 397 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||||| | || |||||||| Sbjct 396 CGTTTTTACAAAGATCTGCAT 376 >seq48601 Length=1711 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | || || ||||| || |||||||| ||||| || || ||| Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||||| || || || || || | ||| ||||| | ||| ||||| || ||||| Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 || ||||| | ||| ||||||||| Sbjct 904 AACGTTTTCACGAAGATCTGCATT 881 >seq54088 Length=1574 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||||||||||||||| | || |||||| || ||||| |||||||| || || || ||||| Sbjct 538 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 597 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 |||||| || || || || || | ||| || || |||||||| || | ||||| Sbjct 598 GGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGT 657 Query 172046 TAATGTTTTAATGAATATCTGCATT 172070 | || |||| ||| |||||||| Sbjct 658 GAGAGTCTTAACGAA-GTCTGCATT 681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903243021198000