Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq51722 109 1e-18
seq150301 96.9 6e-15
seq48601 93.3 8e-14
seq54088 91.5 3e-13
>seq51722
Length=1631
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985
||||||||||||||| | || |||||| || ||||| |||||||| ||||| || |||||
Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598
Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045
|||||| || || || || || | ||| || || |||||||| || || |||||
Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658
Query 172046 TAATGTTTTAATGAATATCTGCATT 172070
| || |||| ||| |||||||||
Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683
>seq150301
Length=587
Score = 96.9 bits (106), Expect = 6e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988
|||||||||||| |||| |||||| |||||||| |||||||| || || || |||||
Sbjct 516 ACCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGC 457
Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048
||| ||||| || ||||| || | ||| || || || || || || || ||||| |
Sbjct 456 TTTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAG 397
Query 172049 TGTTTTAATGAATATCTGCAT 172069
||||| | || ||||||||
Sbjct 396 CGTTTTTACAAAGATCTGCAT 376
>seq48601
Length=1711
Score = 93.3 bits (102), Expect = 8e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | || || ||||| || |||||||| ||||| || || |||
Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||||| || || || || || | ||| ||||| | ||| ||||| || |||||
Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905
Query 172047 AATGTTTTAATGAATATCTGCATT 172070
|| ||||| | ||| |||||||||
Sbjct 904 AACGTTTTCACGAAGATCTGCATT 881
>seq54088
Length=1574
Score = 91.5 bits (100), Expect = 3e-13
Identities = 108/145 (74%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985
||||||||||||||| | || |||||| || ||||| |||||||| || || || |||||
Sbjct 538 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 597
Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045
|||||| || || || || || | ||| || || |||||||| || | |||||
Sbjct 598 GGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGT 657
Query 172046 TAATGTTTTAATGAATATCTGCATT 172070
| || |||| ||| ||||||||
Sbjct 658 GAGAGTCTTAACGAA-GTCTGCATT 681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903243021198000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |