Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1202 107 2e-17 seq1372 93.3 5e-13 seq336 91.5 2e-12 >seq1202 Length=10981 Score = 107 bits (118), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | |||||| || || || |||||||| ||||| | | | Sbjct 10743 GCTTGGCGAGTTCTCCAGGAAGGATCAGACGGACAGCAGTCTGGATTTCGCGGGAGGAAA 10684 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || || || ||||||| ||||||| |||| | Sbjct 10683 TGGTCGATCGCTTGTTGTAGTGGGCGAGTCGCGATGCCTCGGCAGCGATGCGCTCGAAGA 10624 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| |||||||| ||||||| |||||| | ||| || | || |||||| | Sbjct 10623 CGTCGTTCACAAACGAATTCATGATCGACATGGCCTTCGACGAAACTCCGGTGTCGGGAT 10564 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 | || ||||||||||| ||||||| | ||| ||||| Sbjct 10563 GGACTTGCTTGAGCACACGGTAGATGTA-GACGGAGTA 10527 >seq1372 Length=10555 Score = 93.3 bits (102), Expect = 5e-13 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||||| || || || |||||||| ||||| | || Sbjct 563 GCTTGGCGAGTTCTCCAGGAAGAATCAGACGGACAGCAGTCTGGATTTCGCGGGAAGAGA 504 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || || |||||| ||||||| |||| | Sbjct 503 TCGTTGATCGCTTGTTGTAGTGGGCAAGTTTCGATGCCTCGACAGCGATGCGCTCGAAGA 444 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||| ||||||| ||||| | ||| ||||| || |||||| | Sbjct 443 CGTCGTTCACGAACGAATTCATGATTGACATGGCCTTCGAGGAGACTCCGGTGTCGGGAT 384 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 | || ||||||||||| ||||||| | ||| ||||| Sbjct 383 GGACTTGCTTGAGCACACGGTAGATGTA-GACGGAGTA 347 >seq336 Length=17558 Score = 91.5 bits (100), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||| ||||||||| | ||||| || ||| | | || || || ||| Sbjct 1608 AAGCGCACTGACGACATCCCAAGCTGGGATGTAGAATTTCTCAAAGTGGATCAAGGCACT 1667 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 | || ||| | ||||| || |||||||| || |||||||| ||| || ||| | Sbjct 1668 TTGTTCGAGCTTATCCTGGCTGCCAACTATCTTGACATCAAAGGTCTACTTGATGTAACC 1727 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| ||||||| ||||||||||| || || | || ||||| || || | || |||| Sbjct 1728 TGCAAAACTGTGGCGAACATGATCAAAGGGAAAACTCCAGAGGAAATTCG-ACGAACTTT 1786 Query 1592288 -AACATCAAGTACG 1592300 ||||||||| ||| Sbjct 1787 CAACATCAAGAACG 1800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6093408957887270