Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1202 107 2e-17
seq1372 93.3 5e-13
seq336 91.5 2e-12
>seq1202
Length=10981
Score = 107 bits (118), Expect = 2e-17
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| ||||| || | | |||||| || || || |||||||| ||||| | | |
Sbjct 10743 GCTTGGCGAGTTCTCCAGGAAGGATCAGACGGACAGCAGTCTGGATTTCGCGGGAGGAAA 10684
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || |||||||| |||| || || || ||||||| ||||||| |||| |
Sbjct 10683 TGGTCGATCGCTTGTTGTAGTGGGCGAGTCGCGATGCCTCGGCAGCGATGCGCTCGAAGA 10624
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||| |||||||| ||||||| |||||| | ||| || | || |||||| |
Sbjct 10623 CGTCGTTCACAAACGAATTCATGATCGACATGGCCTTCGACGAAACTCCGGTGTCGGGAT 10564
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559
| || ||||||||||| ||||||| | ||| |||||
Sbjct 10563 GGACTTGCTTGAGCACACGGTAGATGTA-GACGGAGTA 10527
>seq1372
Length=10555
Score = 93.3 bits (102), Expect = 5e-13
Identities = 153/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| ||||| || | | ||||| || || || |||||||| ||||| | ||
Sbjct 563 GCTTGGCGAGTTCTCCAGGAAGAATCAGACGGACAGCAGTCTGGATTTCGCGGGAAGAGA 504
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| |||||||| |||| || || |||||| ||||||| |||| |
Sbjct 503 TCGTTGATCGCTTGTTGTAGTGGGCAAGTTTCGATGCCTCGACAGCGATGCGCTCGAAGA 444
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||| || ||||| ||||||| ||||| | ||| ||||| || |||||| |
Sbjct 443 CGTCGTTCACGAACGAATTCATGATTGACATGGCCTTCGAGGAGACTCCGGTGTCGGGAT 384
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559
| || ||||||||||| ||||||| | ||| |||||
Sbjct 383 GGACTTGCTTGAGCACACGGTAGATGTA-GACGGAGTA 347
>seq336
Length=17558
Score = 91.5 bits (100), Expect = 2e-12
Identities = 138/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167
|||||||| ||||||||| | ||||| || ||| | | || || || |||
Sbjct 1608 AAGCGCACTGACGACATCCCAAGCTGGGATGTAGAATTTCTCAAAGTGGATCAAGGCACT 1667
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
| || ||| | ||||| || |||||||| || |||||||| ||| || ||| |
Sbjct 1668 TTGTTCGAGCTTATCCTGGCTGCCAACTATCTTGACATCAAAGGTCTACTTGATGTAACC 1727
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
||||| ||||||| ||||||||||| || || | || ||||| || || | || ||||
Sbjct 1728 TGCAAAACTGTGGCGAACATGATCAAAGGGAAAACTCCAGAGGAAATTCG-ACGAACTTT 1786
Query 1592288 -AACATCAAGTACG 1592300
||||||||| |||
Sbjct 1787 CAACATCAAGAACG 1800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6093408957887270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |