Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq48601 114 1e-20 seq51722 107 2e-18 seq150301 104 2e-17 seq52966 100 3e-16 seq75105 93.3 4e-14 >seq48601 Length=1711 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| ||||| |||||||| ||||| | Sbjct 1246 ATGCAGATCTTTGTGAAGACACTGACAGGGAAAACAATTACCCTCGAAGTCGAAGCTTCG 1305 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| ||||| ||||| Sbjct 1306 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCAG 1365 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| | |||||||| || || Sbjct 1366 CAACGTCTCATCTTTGCTGGTAA 1388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || ||||| || |||||||| || || | Sbjct 398 ATGCAGATCTTCGTGAAGACGTTGACAGGAAAGACTATCACACTCGAAGTCGAGGCTTCA 457 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| |||||| ||||| |||||||| || || || || || ||||| Sbjct 458 GATACAATCGAAAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAG 517 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| | ||||||||||| || Sbjct 518 CAACGACTTATCTTTGCCGGTAA 540 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | |||||| | || || || || || || | ||||| ||||| | Sbjct 882 ATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACCATCACTTTGGAAGTTGAAGCTTCT 941 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| || || || |||||||| || || ||||| Sbjct 942 GACACGATCGAGAACGTAAAGGCTAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCAG 1001 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| |||| ||||| || || Sbjct 1002 CAACGTCTGATTTTTGCTGGTAA 1024 >seq51722 Length=1631 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || |||||||| ||||| || ||||| || Sbjct 682 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATCC 623 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | |||||| || ||||| || || |||||||| || || |||||| Sbjct 622 GACACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAA 563 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 || || |||| ||||| || ||| Sbjct 562 CAGCGACTGATTTTTGCTGGTAAA 539 Score = 105 bits (116), Expect = 6e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || ||||| || || || ||||||||||| ||||| | Sbjct 1630 GATGCAGATTTTCGTCAAGACTCTCACCGGGAAGACCATAACGCTCGAAGTCGAAGCATC 1571 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| |||| |||| ||| | ||| ||||| || || || || || ||||| |||| Sbjct 1570 TGACACAATAGAGAACGTCAAAGCTAAA-ATCCAGGATAAGGAGGGGATTCCTCCTGATC 1512 Query 24822 AACAACGTTTGATCTTTGCCGG 24843 | || || |||||||||||||| Sbjct 1511 AGCAGCGATTGATCTTTGCCGG 1490 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || |||||||| || || | Sbjct 986 ATGCAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATCT 927 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||| || |||||||| || ||||| |||||| Sbjct 926 GACACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCAA 867 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | ||||| ||||| || Sbjct 866 CAAAGATTGATTTTTGCAGG 847 >seq150301 Length=587 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | |||||||| || || || || || || || || || |||||| | Sbjct 376 ATGCAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTCG 435 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| ||| || || ||||| |||||||| || || |||||| Sbjct 436 GATACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAA 495 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || ||||| ||||| || Sbjct 496 CAGCGATTGATTTTTGCTGG 515 >seq52966 Length=1601 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || || |||||||| ||||| || || || | Sbjct 984 ATGCAAATCTTTGTGAAAACTCTTACGGGGAAGACTATTACCCTCGAGGTCGAGGCTTCG 1043 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||||| || || ||||||||||||||||| || || ||||| || || Sbjct 1044 GACACTATAGAAAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 1103 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| | ||||| || || Sbjct 1104 CAACGTCTTATCTTCGCTGG 1123 >seq75105 Length=1195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| || || || || || || || ||||| || || | Sbjct 597 ATGCAAATCTTTGTGAAGACGCTGACTGGAAAGACCATCACTCTTGAAGTGGAGGCTTCG 656 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | |||||| ||||||||||||||| ||||| || || || ||||| Sbjct 657 GACACTATTGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 716 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 || | | ||||||||||| ||| Sbjct 717 CAGAGGCTCATCTTTGCCGGTAAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448956695406800