Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq48601 114 1e-20
seq51722 107 2e-18
seq150301 104 2e-17
seq52966 100 3e-16
seq75105 93.3 4e-14
>seq48601
Length=1711
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || ||||| ||||| |||||||| ||||| |
Sbjct 1246 ATGCAGATCTTTGTGAAGACACTGACAGGGAAAACAATTACCCTCGAAGTCGAAGCTTCG 1305
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| |||||||| ||||| |||||
Sbjct 1306 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCAG 1365
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| | |||||||| || ||
Sbjct 1366 CAACGTCTCATCTTTGCTGGTAA 1388
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||| | || || || ||||| || |||||||| || || |
Sbjct 398 ATGCAGATCTTCGTGAAGACGTTGACAGGAAAGACTATCACACTCGAAGTCGAGGCTTCA 457
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| |||||| ||||| |||||||| || || || || || |||||
Sbjct 458 GATACAATCGAAAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAG 517
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||| | ||||||||||| ||
Sbjct 518 CAACGACTTATCTTTGCCGGTAA 540
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | |||||| | || || || || || || | ||||| ||||| |
Sbjct 882 ATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACCATCACTTTGGAAGTTGAAGCTTCT 941
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | ||||| ||||| || || || |||||||| || || |||||
Sbjct 942 GACACGATCGAGAACGTAAAGGCTAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCAG 1001
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| |||| ||||| || ||
Sbjct 1002 CAACGTCTGATTTTTGCTGGTAA 1024
>seq51722
Length=1631
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| |||| || || || || || |||||||| ||||| || ||||| ||
Sbjct 682 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATCC 623
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | |||||| || ||||| || || |||||||| || || ||||||
Sbjct 622 GACACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAA 563
Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847
|| || |||| ||||| || |||
Sbjct 562 CAGCGACTGATTTTTGCTGGTAAA 539
Score = 105 bits (116), Expect = 6e-18
Identities = 110/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || || ||||| || || || ||||||||||| ||||| |
Sbjct 1630 GATGCAGATTTTCGTCAAGACTCTCACCGGGAAGACCATAACGCTCGAAGTCGAAGCATC 1571
Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
|||||| |||| |||| ||| | ||| ||||| || || || || || ||||| ||||
Sbjct 1570 TGACACAATAGAGAACGTCAAAGCTAAA-ATCCAGGATAAGGAGGGGATTCCTCCTGATC 1512
Query 24822 AACAACGTTTGATCTTTGCCGG 24843
| || || ||||||||||||||
Sbjct 1511 AGCAGCGATTGATCTTTGCCGG 1490
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || ||||| || || |||||||| || || |
Sbjct 986 ATGCAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATCT 927
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || ||| |||||||| || |||||||| || ||||| ||||||
Sbjct 926 GACACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCAA 867
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||| | ||||| ||||| ||
Sbjct 866 CAAAGATTGATTTTTGCAGG 847
>seq150301
Length=587
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | |||||||| || || || || || || || || || |||||| |
Sbjct 376 ATGCAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTCG 435
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| ||| || || ||||| |||||||| || || ||||||
Sbjct 436 GATACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAA 495
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || ||||| ||||| ||
Sbjct 496 CAGCGATTGATTTTTGCTGG 515
>seq52966
Length=1601
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | ||||| || || || || |||||||| ||||| || || || |
Sbjct 984 ATGCAAATCTTTGTGAAAACTCTTACGGGGAAGACTATTACCCTCGAGGTCGAGGCTTCG 1043
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| |||||| || || ||||||||||||||||| || || ||||| || ||
Sbjct 1044 GACACTATAGAAAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 1103
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||| | ||||| || ||
Sbjct 1104 CAACGTCTTATCTTCGCTGG 1123
>seq75105
Length=1195
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || ||||| || || || || || || || ||||| || || |
Sbjct 597 ATGCAAATCTTTGTGAAGACGCTGACTGGAAAGACCATCACTCTTGAAGTGGAGGCTTCG 656
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | |||||| ||||||||||||||| ||||| || || || |||||
Sbjct 657 GACACTATTGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 716
Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847
|| | | ||||||||||| |||
Sbjct 717 CAGAGGCTCATCTTTGCCGGTAAA 740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448956695406800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |