Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1202 156 7e-32 seq23618 134 2e-25 seq1372 131 3e-24 seq12188 129 9e-24 seq15779 125 1e-22 seq38466 104 4e-16 seq7204 104 4e-16 seq166640 102 1e-15 seq33326 91.5 2e-12 seq101992 87.8 3e-11 seq18895 86.0 1e-10 >seq1202 Length=10981 Score = 156 bits (172), Expect = 7e-32 Identities = 178/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| ||||| || | | Sbjct 10782 TGTACTTGGTGACGGCCTTGGTTCCCTCGGACACGGCGTGCTTGGCGAGTTCTCCAGGAA 10723 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 |||||| || || || |||||||| ||||||| | || || |||||||| ||| Sbjct 10722 GGATCAGACGGACAGCAGTCTGGATTTCGCGGGAGGAAATGGTCGATCGCTTGTTGTAGT 10663 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||||| ||||||| |||| | |||||| |||||||| || Sbjct 10662 GGGCG--AGTCGCGATGCCTCGGCAGCGATGCGCTCGAAGACGTCGTTCACAAACGAATT 10605 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | || || | || |||||| || || ||||||||||| Sbjct 10604 CATGATCGACATGGCCTTCGACGAAACTCCGGTGTCGGGATGGACTTGCTTGAGCAC 10548 Score = 111 bits (122), Expect = 2e-18 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| ||||| || | | Sbjct 129 TGTACTTGGTGACGGCCTTGGTTCCCTCGGATACGGCGTGCTTGGCGAGTTCTCCAGGGA 70 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 |||||| || ||||| |||||||| ||||| | | |||||| ||||||| |||| Sbjct 69 GGATCAGACGGACGGCAGTCTGGATTTCGCGAGAGGAGATCGTCGATCGCTTGTTGTAGT 10 Query 1485588 GCGCG 1485592 | ||| Sbjct 9 GGGCG 5 >seq23618 Length=2847 Score = 134 bits (148), Expect = 2e-25 Identities = 146/192 (76%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| || ||||||||| | || ||||| ||| | | Sbjct 192 TGTACTTAGTGACGGCCTTGGTTCCCTCGGACACGGCGTGCTTCGCGAGTTCTCCGGGAA 133 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 |||||| || ||||| |||||||| ||||||| | |||||| ||||||| |||| Sbjct 132 GGATCAGACGGACGGCAGTCTGGATTTCGCGGGAGGAGATCGTCGATCGCTTGTTGTAGT 73 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||||| ||||||| |||| | |||||| || ||||| || Sbjct 72 GTGCG--AGTTTCGATGCCTCAACAGCGATGCGCTCGAAGACGTCGTTCACGAACGAATT 15 Query 1485648 CATGATCGACAT 1485659 |||||||||||| Sbjct 14 CATGATCGACAT 3 >seq1372 Length=10555 Score = 131 bits (144), Expect = 3e-24 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||||||||| || ||||| || ||||||||| |||| ||||| || | | Sbjct 602 TGTACTTAGTGACGGCCTTCGTTCCCTCGGACACGGCGTGCTTGGCGAGTTCTCCAGGAA 543 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || |||||||| ||||||| |||||| |||||||| | Sbjct 542 GAATCAGACGGACAGCAGTCTGGATTTCGCGGGAAGAGATCGTTGATCGCTTGTTGTAGT 483 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||||| ||||||| |||| | |||||| || ||||| |||| Sbjct 482 GGGCAAGTTTCGATGCCTCGACAGCGATGCGCTCGAAGACGTCGTTCACGAACGAATTCA 423 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | || ||||| || |||||| || || ||||||||||| Sbjct 422 TGATTGACATGGCCTTCGAGGAGACTCCGGTGTCGGGATGGACTTGCTTGAGCAC 368 >seq12188 Length=4179 Score = 129 bits (142), Expect = 9e-24 Identities = 172/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||||||||| || ||||| || ||||||||| |||| ||||| || | | Sbjct 3089 TGTACTTAGTGACGGCCTTCGTTCCCTCGGACACGGCGTGCTTGGCGAGTTCACCAGGAA 3148 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 |||||| || ||||| |||||||| ||||||| | |||||| || |||| |||| Sbjct 3149 GGATCAGACGGACGGCAGTCTGGATTTCGCGGGAGGAGATCGTCGATCGTTTGTTGTAGT 3208 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || |||||| | || || |||| | |||||| || ||||| || Sbjct 3209 GGGCG--AGCTTCGATGCCTCGACAGCAATTCGCTCGAAGACGTCGTTCACGAACGAATT 3266 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | || |||| || |||||| || || |||||||| || Sbjct 3267 CATGATCGACATGGCCTTCGACGAGACTCCGGTGTCGGGATGGACTTGCTTGAGTAC 3323 >seq15779 Length=3614 Score = 125 bits (138), Expect = 1e-22 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| || ||||| |||||| | || ||||| || | | Sbjct 3266 TGTACTTGGTGACGGCCTTGGTACCTTCAGAGACAGCGTGCTTCGCGAGTTCTCCAGGAA 3325 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 |||||| || ||||| ||||| || ||||||| ||||||| ||||||| |||| Sbjct 3326 GGATCAGACGGACGGCAGTCTGAATTTCGCGGGACGAGATCGTGGATCGCTTGTTGTAGT 3385 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || |||||| | || || |||| | |||||| || ||||| || Sbjct 3386 GGGCG--AGCTTCGATGCCTCGACAGCAATTCGCTCGAAGACGTCGTTCACGAACGAATT 3443 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||| ||||||| || || | || ||| || || |||||||| || || Sbjct 3444 CATGATGGACATCGCCTTCGATGACACTCCAGTGTCAGGATGAACCTGCTTAAGTAC 3500 >seq38466 Length=2041 Score = 104 bits (114), Expect = 4e-16 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| ||||| || || || || || || || |||||||||| || ||| Sbjct 1562 TGTACTTTGTGACAGCCTTCGTGCCTTCGGACACAGCATGTTTGGCCAGTTCCCCTGGCA 1503 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || ||||| ||||| || | ||| || | | |||||| | Sbjct 1502 GAATCAGACGAACAGCAGTCTGAATCTCACGAGAAGAGATGGTTGTCCTCTTGTTGTAGT 1443 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || |||||||| ||||||| |||| | ||| || || || || |||| Sbjct 1442 GAGCAAGACGAGAGGCCTCGGCAGCGATGCGTTCGAAGACGTCATTCACGAATGAATTCA 1383 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| | ||| ||||| || || ||||| || || Sbjct 1382 TGATCGACATCGCCCTTGAGGAAACGCCGGTATCGGGATGAACTTGCTTCAGTAC 1328 >seq7204 Length=5428 Score = 104 bits (114), Expect = 4e-16 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| ||||| ||||| ||||| || ||||| ||||| |||||| || || ||| Sbjct 787 TACTTAGTGACAGCCTTTGTACCTTCAGAGACAGCGTGTTTGGCCAACTCTCCAGGCAAA 846 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGTGC 1485589 || || || || || || ||||| || || | ||| ||| |||||||| |||| Sbjct 847 ATTAGTCGAACAGCAGTTTGGATTTCACGAGAAGAGATGGTGGACCGCTTGTTGTAGTGG 906 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || || ||||| | ||||||| |||| | |||||| || |||||||||| Sbjct 907 GCG--AGACGAGATGCCTCAGCAGCGATGCGTTCGAAGACGTCGTTCACGAACGAGTTCA 964 Query 1485650 TGATCGACAT 1485659 |||||||||| Sbjct 965 TGATCGACAT 974 >seq166640 Length=503 Score = 102 bits (112), Expect = 1e-15 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| | || ||||| || | | Sbjct 390 TGTACTTGGTGACGGCCTTGGTTCCCTCGGACACGGCGTGCTTCGCGAGTTCTCCAGGAA 449 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT 1485583 |||||| || ||||| |||||||| || |||| | |||||| ||||||| Sbjct 450 GGATCAGACGGACGGCAGTCTGGATTTCACGGGAGGAGATCGTCGATCGCTTGT 503 >seq33326 Length=2264 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| || || ||||| || || |||||||| |||||| || || | | Sbjct 1795 TACTTGGTGACAGCTTTCGTACCTTCGGACACGGCGTGTTTGGCCAACTCTCCAGGTAGA 1854 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 ||||| || || ||||| || || ||||| | ||||||| || || || | || Sbjct 1855 ATCAGACGAACTGCGGTTTGAATTTCGCGAGAAGAGATCGTGGAACGTTTATTGTAGTGC 1914 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || || || | | || || || | | |||||||||||| || ||||| Sbjct 1915 GCAAGTCGTGAAGCTTCAGCAGCAATACGCTCAAAAACGTCGTTGACAAATGAATTCATA 1974 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || ||||| | |||| |||| || |||||| || || || ||||| || Sbjct 1975 ATAGACATAGCTTTGGATGAGACTCCAGTGTCGGGATGGACTTGTTTGAGGAC 2027 >seq101992 Length=890 Score = 87.8 bits (96), Expect = 3e-11 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| ||||| || || || |||||| ||||||| || || ||| Sbjct 665 TGTACTTGGTGACAGCCTTCGTACCTTCAGATACAGCGTGCTTGGCCAGCTCTCCAGGCA 724 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || || || || || || | ||||||| || ||||| Sbjct 725 GAATCAGACGAACTGCAGTTTGAATTTCACGCGAAGAGATCGTGGAACGTTTGTTGTAAT 784 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | | || || || | | |||||||||||| || |||| Sbjct 785 GAGCAAGCCGTGAAGCTTCAGCAGCAATACGCTCAAAAACGTCGTTGACAAATGAATTCA 844 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 | || ||||| | |||| |||| || |||||| || || || Sbjct 845 TAATAGACATAGCTTTGGATGAGACTCCAGTGTCGGGATGGACTTG 890 >seq18895 Length=3259 Score = 86.0 bits (94), Expect = 1e-10 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||||||||| || ||||| || ||||||||| |||| ||||| || | | Sbjct 3170 TGTACTTAGTGACGGCCTTCGTTCCCTCGGACACGGCGTGCTTGGCGAGTTCTCCAGGAA 3229 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGC 1485559 |||||| || || || |||||||| |||| Sbjct 3230 GGATCAGACGGACAGCAGTCTGGATTTCGC 3259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7898448872199090