Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1202 156 7e-32
seq23618 134 2e-25
seq1372 131 3e-24
seq12188 129 9e-24
seq15779 125 1e-22
seq38466 104 4e-16
seq7204 104 4e-16
seq166640 102 1e-15
seq33326 91.5 2e-12
seq101992 87.8 3e-11
seq18895 86.0 1e-10
>seq1202
Length=10981
Score = 156 bits (172), Expect = 7e-32
Identities = 178/237 (75%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| |||| ||||| || | |
Sbjct 10782 TGTACTTGGTGACGGCCTTGGTTCCCTCGGACACGGCGTGCTTGGCGAGTTCTCCAGGAA 10723
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587
|||||| || || || |||||||| ||||||| | || || |||||||| |||
Sbjct 10722 GGATCAGACGGACAGCAGTCTGGATTTCGCGGGAGGAAATGGTCGATCGCTTGTTGTAGT 10663
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || || ||||||| ||||||| |||| | |||||| |||||||| ||
Sbjct 10662 GGGCG--AGTCGCGATGCCTCGGCAGCGATGCGCTCGAAGACGTCGTTCACAAACGAATT 10605
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||||| | || || | || |||||| || || |||||||||||
Sbjct 10604 CATGATCGACATGGCCTTCGACGAAACTCCGGTGTCGGGATGGACTTGCTTGAGCAC 10548
Score = 111 bits (122), Expect = 2e-18
Identities = 100/125 (80%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| |||| ||||| || | |
Sbjct 129 TGTACTTGGTGACGGCCTTGGTTCCCTCGGATACGGCGTGCTTGGCGAGTTCTCCAGGGA 70
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
|||||| || ||||| |||||||| ||||| | | |||||| ||||||| ||||
Sbjct 69 GGATCAGACGGACGGCAGTCTGGATTTCGCGAGAGGAGATCGTCGATCGCTTGTTGTAGT 10
Query 1485588 GCGCG 1485592
| |||
Sbjct 9 GGGCG 5
>seq23618
Length=2847
Score = 134 bits (148), Expect = 2e-25
Identities = 146/192 (76%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| |||||||||||||| ||||| || ||||||||| | || ||||| ||| | |
Sbjct 192 TGTACTTAGTGACGGCCTTGGTTCCCTCGGACACGGCGTGCTTCGCGAGTTCTCCGGGAA 133
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
|||||| || ||||| |||||||| ||||||| | |||||| ||||||| ||||
Sbjct 132 GGATCAGACGGACGGCAGTCTGGATTTCGCGGGAGGAGATCGTCGATCGCTTGTTGTAGT 73
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || ||||| ||||||| |||| | |||||| || ||||| ||
Sbjct 72 GTGCG--AGTTTCGATGCCTCAACAGCGATGCGCTCGAAGACGTCGTTCACGAACGAATT 15
Query 1485648 CATGATCGACAT 1485659
||||||||||||
Sbjct 14 CATGATCGACAT 3
>seq1372
Length=10555
Score = 131 bits (144), Expect = 3e-24
Identities = 170/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| ||||||||||| || ||||| || ||||||||| |||| ||||| || | |
Sbjct 602 TGTACTTAGTGACGGCCTTCGTTCCCTCGGACACGGCGTGCTTGGCGAGTTCTCCAGGAA 543
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||||| || || || |||||||| ||||||| |||||| |||||||| |
Sbjct 542 GAATCAGACGGACAGCAGTCTGGATTTCGCGGGAAGAGATCGTTGATCGCTTGTTGTAGT 483
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || |||||| ||||||| |||| | |||||| || ||||| ||||
Sbjct 482 GGGCAAGTTTCGATGCCTCGACAGCGATGCGCTCGAAGACGTCGTTCACGAACGAATTCA 423
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||| ||||| | || ||||| || |||||| || || |||||||||||
Sbjct 422 TGATTGACATGGCCTTCGAGGAGACTCCGGTGTCGGGATGGACTTGCTTGAGCAC 368
>seq12188
Length=4179
Score = 129 bits (142), Expect = 9e-24
Identities = 172/237 (73%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| ||||||||||| || ||||| || ||||||||| |||| ||||| || | |
Sbjct 3089 TGTACTTAGTGACGGCCTTCGTTCCCTCGGACACGGCGTGCTTGGCGAGTTCACCAGGAA 3148
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
|||||| || ||||| |||||||| ||||||| | |||||| || |||| ||||
Sbjct 3149 GGATCAGACGGACGGCAGTCTGGATTTCGCGGGAGGAGATCGTCGATCGTTTGTTGTAGT 3208
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || |||||| | || || |||| | |||||| || ||||| ||
Sbjct 3209 GGGCG--AGCTTCGATGCCTCGACAGCAATTCGCTCGAAGACGTCGTTCACGAACGAATT 3266
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||||| | || |||| || |||||| || || |||||||| ||
Sbjct 3267 CATGATCGACATGGCCTTCGACGAGACTCCGGTGTCGGGATGGACTTGCTTGAGTAC 3323
>seq15779
Length=3614
Score = 125 bits (138), Expect = 1e-22
Identities = 171/237 (72%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||||||||||||||| || ||||| |||||| | || ||||| || | |
Sbjct 3266 TGTACTTGGTGACGGCCTTGGTACCTTCAGAGACAGCGTGCTTCGCGAGTTCTCCAGGAA 3325
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
|||||| || ||||| ||||| || ||||||| ||||||| ||||||| ||||
Sbjct 3326 GGATCAGACGGACGGCAGTCTGAATTTCGCGGGACGAGATCGTGGATCGCTTGTTGTAGT 3385
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || |||||| | || || |||| | |||||| || ||||| ||
Sbjct 3386 GGGCG--AGCTTCGATGCCTCGACAGCAATTCGCTCGAAGACGTCGTTCACGAACGAATT 3443
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||| ||||||| || || | || ||| || || |||||||| || ||
Sbjct 3444 CATGATGGACATCGCCTTCGATGACACTCCAGTGTCAGGATGAACCTGCTTAAGTAC 3500
>seq38466
Length=2041
Score = 104 bits (114), Expect = 4e-16
Identities = 164/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| ||||| ||||| || || || || || || || |||||||||| || |||
Sbjct 1562 TGTACTTTGTGACAGCCTTCGTGCCTTCGGACACAGCATGTTTGGCCAGTTCCCCTGGCA 1503
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||||| || || || ||||| ||||| || | ||| || | | |||||| |
Sbjct 1502 GAATCAGACGAACAGCAGTCTGAATCTCACGAGAAGAGATGGTTGTCCTCTTGTTGTAGT 1443
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || || |||||||| ||||||| |||| | ||| || || || || ||||
Sbjct 1442 GAGCAAGACGAGAGGCCTCGGCAGCGATGCGTTCGAAGACGTCATTCACGAATGAATTCA 1383
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||||| | ||| | ||| ||||| || || ||||| || ||
Sbjct 1382 TGATCGACATCGCCCTTGAGGAAACGCCGGTATCGGGATGAACTTGCTTCAGTAC 1328
>seq7204
Length=5428
Score = 104 bits (114), Expect = 4e-16
Identities = 138/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
||||| ||||| ||||| ||||| || ||||| ||||| |||||| || || |||
Sbjct 787 TACTTAGTGACAGCCTTTGTACCTTCAGAGACAGCGTGTTTGGCCAACTCTCCAGGCAAA 846
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGTGC 1485589
|| || || || || || ||||| || || | ||| ||| |||||||| ||||
Sbjct 847 ATTAGTCGAACAGCAGTTTGGATTTCACGAGAAGAGATGGTGGACCGCTTGTTGTAGTGG 906
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
||| || || ||||| | ||||||| |||| | |||||| || ||||||||||
Sbjct 907 GCG--AGACGAGATGCCTCAGCAGCGATGCGTTCGAAGACGTCGTTCACGAACGAGTTCA 964
Query 1485650 TGATCGACAT 1485659
||||||||||
Sbjct 965 TGATCGACAT 974
>seq166640
Length=503
Score = 102 bits (112), Expect = 1e-15
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| | || ||||| || | |
Sbjct 390 TGTACTTGGTGACGGCCTTGGTTCCCTCGGACACGGCGTGCTTCGCGAGTTCTCCAGGAA 449
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT 1485583
|||||| || ||||| |||||||| || |||| | |||||| |||||||
Sbjct 450 GGATCAGACGGACGGCAGTCTGGATTTCACGGGAGGAGATCGTCGATCGCTTGT 503
>seq33326
Length=2264
Score = 91.5 bits (100), Expect = 2e-12
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
||||||||||| || || ||||| || || |||||||| |||||| || || | |
Sbjct 1795 TACTTGGTGACAGCTTTCGTACCTTCGGACACGGCGTGTTTGGCCAACTCTCCAGGTAGA 1854
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591
||||| || || ||||| || || ||||| | ||||||| || || || | ||
Sbjct 1855 ATCAGACGAACTGCGGTTTGAATTTCGCGAGAAGAGATCGTGGAACGTTTATTGTAGTGC 1914
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
|| || || || || | | || || || | | |||||||||||| || |||||
Sbjct 1915 GCAAGTCGTGAAGCTTCAGCAGCAATACGCTCAAAAACGTCGTTGACAAATGAATTCATA 1974
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|| ||||| | |||| |||| || |||||| || || || ||||| ||
Sbjct 1975 ATAGACATAGCTTTGGATGAGACTCCAGTGTCGGGATGGACTTGTTTGAGGAC 2027
>seq101992
Length=890
Score = 87.8 bits (96), Expect = 3e-11
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| ||||| ||||| || || || |||||| ||||||| || || |||
Sbjct 665 TGTACTTGGTGACAGCCTTCGTACCTTCAGATACAGCGTGCTTGGCCAGCTCTCCAGGCA 724
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||||| || || || || || || || || | ||||||| || |||||
Sbjct 725 GAATCAGACGAACTGCAGTTTGAATTTCACGCGAAGAGATCGTGGAACGTTTGTTGTAAT 784
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || || || || | | || || || | | |||||||||||| || ||||
Sbjct 785 GAGCAAGCCGTGAAGCTTCAGCAGCAATACGCTCAAAAACGTCGTTGACAAATGAATTCA 844
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695
| || ||||| | |||| |||| || |||||| || || ||
Sbjct 845 TAATAGACATAGCTTTGGATGAGACTCCAGTGTCGGGATGGACTTG 890
>seq18895
Length=3259
Score = 86.0 bits (94), Expect = 1e-10
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| ||||||||||| || ||||| || ||||||||| |||| ||||| || | |
Sbjct 3170 TGTACTTAGTGACGGCCTTCGTTCCCTCGGACACGGCGTGCTTGGCGAGTTCTCCAGGAA 3229
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGC 1485559
|||||| || || || |||||||| ||||
Sbjct 3230 GGATCAGACGGACAGCAGTCTGGATTTCGC 3259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7898448872199090
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