Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq54088 86.0 5e-12 seq51722 86.0 5e-12 >seq54088 Length=1574 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||||||||| ||||| || || || || || ||| | ||| ||||| Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || |||||| ||||| || || | || ||||| Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 278 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| |||| || | ||| || || || || ||||||| ||| || | ||||| || Sbjct 277 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 218 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || ||||||||||| ||| | ||| Sbjct 217 TATCCAAAAGGAGTCAACGCTTCAC 193 >seq51722 Length=1631 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||||||||| ||||| || || || || || ||| | ||| ||||| Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || |||||| ||||| || || | || ||||| Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 276 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| |||| || | ||| || || || || ||||||| ||| || | ||||| || Sbjct 275 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 216 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || ||||||||||| ||| | ||| Sbjct 215 TATCCAAAAGGAGTCAACGCTTCAC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398063454056590