Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq52966 87.8 1e-12 seq51722 87.8 1e-12 seq48601 87.8 1e-12 seq75105 86.0 5e-12 >seq52966 Length=1601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723 |||||| || || |||||||||||||||||||| | || || ||| |||||| ||| Sbjct 1106 TTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTTTCTATAGT 1047 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| ||| || || || || || ||||| || || || | ||||| ||||| || || Sbjct 1046 GTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGAGTTTTCACAAAGATTTG 987 Query 29784 CATTTTAAAACGTATGCGTTT 29804 |||| |||| || ||||| Sbjct 986 CATTACTAAACAAATCCGTTT 966 >seq51722 Length=1631 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | ||||||||||| ||||| || ||||| || ||||| || || | || | Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 ||||| | || | |||||||| || ||||| ||||| || ||||| ||||| | Sbjct 907 TTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGA 966 Query 29767 GTTTTAACAAATATCTGCATT 29787 || || ||||| ||||||||| Sbjct 967 GTCTTCACAAAGATCTGCATT 987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | || | || ||||| || || || || ||||| || ||||| |||||| Sbjct 1143 TTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTG-AATTTT 1201 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || || ||| |||| | ||| || || ||| |||||||| || || ||||||||||| Sbjct 1202 TGCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGT 1261 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 | || || || ||||| |||||| Sbjct 1262 GAGAGTCTTGACGAATATTTGCATT 1286 >seq48601 Length=1711 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || | || ||||||||| || ||||||||||| |||||||| ||| || Sbjct 540 TTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTG-AATCTT 482 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| ||| |||| | || || ||| || ||||| || || ||||| || || || Sbjct 481 AGCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGT 422 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 || || || || || ||||||||| Sbjct 421 CAACGTCTTCACGAAGATCTGCATT 397 >seq75105 Length=1195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| || ||| | || | || |||||||| || ||||| || || |||||||| | || Sbjct 740 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 681 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| ||| | || | |||||| ||| || ||||||||||| || || || ||||| Sbjct 680 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGT 621 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| || |||||| Sbjct 620 CAGCGTCTTCACAAAGATTTGCATT 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384433703140710