Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq21886 215 4e-50 seq84433 131 1e-24 >seq21886 Length=2983 Score = 215 bits (238), Expect = 4e-50 Identities = 669/1020 (66%), Gaps = 14/1020 (1%) Strand=Plus/Plus Query 281462 AATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAAT 281521 ||| | || ||||||||||| || || | | || || || || || || | ||| Sbjct 766 AATCTTACCTCAATTTGAGGTACTCCACGAGGCGCTGGCGGAATTCCAGACAGCTCAAAC 825 Query 281522 GTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTA 281581 |||| || ||| || || || || | || || || || || | |||||| Sbjct 826 TTTCCAAGGAGATTGTTGTCCTTGGTCATAGCACGCTCTCCTTCAAAGACCTGGATAAGT 885 Query 281582 ACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGT 281640 || ||| ||| || || ||||| || || ||| ||||| | | || || || || Sbjct 886 ACGCCAGGTTGGTTGTCGGAATACGTGGTGAATG-TCTGGCTGGTCTTGGTGGGGATGGT 944 Query 281641 TGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAG 281700 ||||| || | || | | |||||| | ||| || || || || | |||||| ||||| Sbjct 945 CGTGTTCCTCTTGATTAGAGCGGTCATCACACCTCCGGCGGTCTCGATACCAAGCGAAAG 1004 Query 281701 AGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAA 281759 ||||| ||||| | || | | || ||| | ||| | | || | ||| ||| | Sbjct 1005 AGGAGCAACATCGAGAAGCAGGAGATCTTGCACAGCTTC-TGACTTGTCACCGGAAAGGA 1063 Query 281760 TAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTA 281819 |||| ||||| | ||| ||||| || || ||||||||||| || || | | | || | Sbjct 1064 TAGCAGCTTGCACAGCCGCACCGTAGGCGACAGCTTCATCGGGGTTGATGGACTTGTTCA 1123 Query 281820 GTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATC 281879 ||| || ||| ||||| || ||||| || | | |||||||| ||||||| || | Sbjct 1124 GTTCCTTTCCAGAGAAAAGATCCGAAAGGAGCTTTTGCACCTTAGGGATACGAGTGGAAC 1183 Query 281880 CTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA-AAACT 281938 |||| || || ||||| ||||| | ||| || |||| ||| | |||| | | ||| Sbjct 1184 CTCCGACCAAGACAATATCATGGATCTGACTCTTGTCCATTTTAGCATCCCTCAGAGACT 1243 Query 281939 TTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 281998 | | || |||| || | || | || | || | || || ||||| || ||| Sbjct 1244 TCTCCACAGGGTCCATG-GTAGAACGGAAGAGATCAGCGCACAGCTCTTCAAAACGAGCA 1302 Query 281999 CTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT 282057 | ||| | || | || || ||||| || || |||| || || | |||||| | || Sbjct 1303 CGAGTGA-TGTTAGTGTAGAAGTCAATACCCTCAAACAGCGAGTCGATTTCAATTGAAGC 1361 Query 282058 TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAA 282117 |||| || ||||| || | ||| || ||||| || || || || | || | || | Sbjct 1362 CTGAGATGACGAAGAGAGGGTACGCTTGGCACGCTCGCAAGCGGTGCGGAGACGACGGAG 1421 Query 282118 GGC-TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACC 282176 ||| | | | || || | |||| | || | || | ||||| || | ||| | Sbjct 1422 GGCACGAGGGTTAGTG-TTGAGATCTTTCTTGTGCTTGCGTTTGAATTCGGCGACAAAGT 1480 Query 282177 ATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTC 282236 | || | || || ||||| ||||| ||||| | | ||||| || | |||| Sbjct 1481 GGTTGACCATTCGGTTGTCAAAGTCTTCTCCTCCAAGATGAGTATCACCAGCAGTAGACT 1540 Query 282237 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCA 282296 |||||| ||||| |||||| || | || || | || ||||| ||| ||||| || | Sbjct 1541 TTACTTCGAAAATTCCATCCTCGATAGTCAGGATAGAGACATCGAAGGTACCACCTCCGA 1600 Query 282297 TATCAAAAATAAGTACATT--CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAA 282354 ||| |||||||| || || | || ||||| || || || ||||| || || | Sbjct 1601 GATCGAAAATAAGGACGTTGCGCTCTCCTTGTC--CCTTCTTGTCGAGACCGTAGGCGAT 1658 Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 |||||| ||||| ||||| || ||||||| | |||||| | || | || || || Sbjct 1659 AGCAGCTGCAGTGGGTTCGTTGATAATTCGAAGAACATTCATTCCTGAGATGGCACCGGC 1718 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 |||||| || || || | ||| || || || || || ||||| ||||| || || ||||| Sbjct 1719 ATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGGACAGTGATGACAGCATC 1778 >seq84433 Length=1073 Score = 131 bits (144), Expect = 1e-24 Identities = 243/356 (68%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 |||||||||||||||||||| | || | ||| || || ||||| ||| | || Sbjct 788 TCAAAATCTTCACCTCCCAAGTGGGTGTCTCCGTTAGTGGCCAATACTTCGAATACACCG 729 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 | || | | | | || |||||| ||| ||||| |||| || || | || | Sbjct 728 TTGTCGATGGTAAGCATAGACACATCAAAGGTACCACCTCCCAAGTCGAATACGAGGATG 669 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || ||| ||| || || |||||||| || || | ||| || |||||||| || Sbjct 668 TTGCGCTCTC---CTTCCTTCTTGTCAAGACCGTAGGCGATAGCGGCTGCAGTTGGCTCG 612 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || ||||||| | ||||||||| ||||| || |||| || || || |||||||| | | Sbjct 611 TTGATAATTCGTACAACATTAAGTCCAGCGATGGTTCCGGCGTCCTTGGTGGCTTGACGT 552 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493 || | |||||| || || ||||||||||| | || || | | | ||||| ||||||| | Sbjct 551 TGGGCATCGTTGAAGTAGGCAGGAACAGTTACTACAGCGTGTTTCACTTCCTTTCCAAGA 492 Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549 || | || ||| ||||| || | | || ||| | ||||||| ||| || Sbjct 491 TAGGACTCGGCAATTTCCTTCATCTTTCCGAGAACCATAGCCGAAATTTCTTCGGG 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3732416186052060