Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq21886 215 4e-50
seq84433 131 1e-24
>seq21886
Length=2983
Score = 215 bits (238), Expect = 4e-50
Identities = 669/1020 (66%), Gaps = 14/1020 (1%)
Strand=Plus/Plus
Query 281462 AATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAAT 281521
||| | || ||||||||||| || || | | || || || || || || | |||
Sbjct 766 AATCTTACCTCAATTTGAGGTACTCCACGAGGCGCTGGCGGAATTCCAGACAGCTCAAAC 825
Query 281522 GTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTA 281581
|||| || ||| || || || || | || || || || || | ||||||
Sbjct 826 TTTCCAAGGAGATTGTTGTCCTTGGTCATAGCACGCTCTCCTTCAAAGACCTGGATAAGT 885
Query 281582 ACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGT 281640
|| ||| ||| || || ||||| || || ||| ||||| | | || || || ||
Sbjct 886 ACGCCAGGTTGGTTGTCGGAATACGTGGTGAATG-TCTGGCTGGTCTTGGTGGGGATGGT 944
Query 281641 TGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAG 281700
||||| || | || | | |||||| | ||| || || || || | |||||| |||||
Sbjct 945 CGTGTTCCTCTTGATTAGAGCGGTCATCACACCTCCGGCGGTCTCGATACCAAGCGAAAG 1004
Query 281701 AGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAA 281759
||||| ||||| | || | | || ||| | ||| | | || | ||| ||| |
Sbjct 1005 AGGAGCAACATCGAGAAGCAGGAGATCTTGCACAGCTTC-TGACTTGTCACCGGAAAGGA 1063
Query 281760 TAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTA 281819
|||| ||||| | ||| ||||| || || ||||||||||| || || | | | || |
Sbjct 1064 TAGCAGCTTGCACAGCCGCACCGTAGGCGACAGCTTCATCGGGGTTGATGGACTTGTTCA 1123
Query 281820 GTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATC 281879
||| || ||| ||||| || ||||| || | | |||||||| ||||||| || |
Sbjct 1124 GTTCCTTTCCAGAGAAAAGATCCGAAAGGAGCTTTTGCACCTTAGGGATACGAGTGGAAC 1183
Query 281880 CTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA-AAACT 281938
|||| || || ||||| ||||| | ||| || |||| ||| | |||| | | |||
Sbjct 1184 CTCCGACCAAGACAATATCATGGATCTGACTCTTGTCCATTTTAGCATCCCTCAGAGACT 1243
Query 281939 TTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 281998
| | || |||| || | || | || | || | || || ||||| || |||
Sbjct 1244 TCTCCACAGGGTCCATG-GTAGAACGGAAGAGATCAGCGCACAGCTCTTCAAAACGAGCA 1302
Query 281999 CTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT 282057
| ||| | || | || || ||||| || || |||| || || | |||||| | ||
Sbjct 1303 CGAGTGA-TGTTAGTGTAGAAGTCAATACCCTCAAACAGCGAGTCGATTTCAATTGAAGC 1361
Query 282058 TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAA 282117
|||| || ||||| || | ||| || ||||| || || || || | || | || |
Sbjct 1362 CTGAGATGACGAAGAGAGGGTACGCTTGGCACGCTCGCAAGCGGTGCGGAGACGACGGAG 1421
Query 282118 GGC-TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACC 282176
||| | | | || || | |||| | || | || | ||||| || | ||| |
Sbjct 1422 GGCACGAGGGTTAGTG-TTGAGATCTTTCTTGTGCTTGCGTTTGAATTCGGCGACAAAGT 1480
Query 282177 ATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTC 282236
| || | || || ||||| ||||| ||||| | | ||||| || | ||||
Sbjct 1481 GGTTGACCATTCGGTTGTCAAAGTCTTCTCCTCCAAGATGAGTATCACCAGCAGTAGACT 1540
Query 282237 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCA 282296
|||||| ||||| |||||| || | || || | || ||||| ||| ||||| || |
Sbjct 1541 TTACTTCGAAAATTCCATCCTCGATAGTCAGGATAGAGACATCGAAGGTACCACCTCCGA 1600
Query 282297 TATCAAAAATAAGTACATT--CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAA 282354
||| |||||||| || || | || ||||| || || || ||||| || || |
Sbjct 1601 GATCGAAAATAAGGACGTTGCGCTCTCCTTGTC--CCTTCTTGTCGAGACCGTAGGCGAT 1658
Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414
|||||| ||||| ||||| || ||||||| | |||||| | || | || || ||
Sbjct 1659 AGCAGCTGCAGTGGGTTCGTTGATAATTCGAAGAACATTCATTCCTGAGATGGCACCGGC 1718
Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
|||||| || || || | ||| || || || || || ||||| ||||| || || |||||
Sbjct 1719 ATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGGACAGTGATGACAGCATC 1778
>seq84433
Length=1073
Score = 131 bits (144), Expect = 1e-24
Identities = 243/356 (68%), Gaps = 3/356 (1%)
Strand=Plus/Minus
Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253
|||||||||||||||||||| | || | ||| || || ||||| ||| | ||
Sbjct 788 TCAAAATCTTCACCTCCCAAGTGGGTGTCTCCGTTAGTGGCCAATACTTCGAATACACCG 729
Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313
| || | | | | || |||||| ||| ||||| |||| || || | || |
Sbjct 728 TTGTCGATGGTAAGCATAGACACATCAAAGGTACCACCTCCCAAGTCGAATACGAGGATG 669
Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373
|| ||| ||| || || |||||||| || || | ||| || |||||||| ||
Sbjct 668 TTGCGCTCTC---CTTCCTTCTTGTCAAGACCGTAGGCGATAGCGGCTGCAGTTGGCTCG 612
Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433
|| ||||||| | ||||||||| ||||| || |||| || || || |||||||| | |
Sbjct 611 TTGATAATTCGTACAACATTAAGTCCAGCGATGGTTCCGGCGTCCTTGGTGGCTTGACGT 552
Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493
|| | |||||| || || ||||||||||| | || || | | | ||||| ||||||| |
Sbjct 551 TGGGCATCGTTGAAGTAGGCAGGAACAGTTACTACAGCGTGTTTCACTTCCTTTCCAAGA 492
Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549
|| | || ||| ||||| || | | || ||| | ||||||| ||| ||
Sbjct 491 TAGGACTCGGCAATTTCCTTCATCTTTCCGAGAACCATAGCCGAAATTTCTTCGGG 436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3732416186052060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |