Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq54088 178 3e-39 seq51722 178 3e-39 seq48601 134 3e-26 seq75105 127 4e-24 seq150301 118 2e-21 seq150799 107 4e-18 seq133353 105 1e-17 >seq54088 Length=1574 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | ||| || || || || || || |||||||| || || Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 229 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||| || ||||| |||||||||||||| |||| || ||||| ||||| Sbjct 230 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 289 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||||||||||||||| || || ||||| ||||| || || | |||||| Sbjct 290 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 349 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||||||||||| || ||||| ||||| ||||| || |||||| Sbjct 350 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/145 (75%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| |||||||| || |||| ||||||||||| || ||||||||||| || || || || Sbjct 538 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 597 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 |||||||| ||||| || || || | ||| || || | ||| || ||| |||| || Sbjct 598 GGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGT 657 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || |||||||| Sbjct 658 GAGAGTCTTAACGAA-GTCTGCATT 681 >seq51722 Length=1631 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | ||| || || || || || || |||||||| || || Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 227 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||| || ||||| |||||||||||||| |||| || ||||| ||||| Sbjct 228 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 287 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||||||||||||||| || || ||||| ||||| || || | |||||| Sbjct 288 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 347 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||||||||||| || ||||| ||||| ||||| || |||||| Sbjct 348 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| || || |||| || || |||||||| ||||| |||||||||||||| ||| Sbjct 1143 TTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTTT 1202 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| ||||| | ||| ||||| | || || || ||||| || Sbjct 1203 GCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGTG 1262 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || ||||| |||||| Sbjct 1263 AGAGTCTTGACGAATATTTGCATT 1286 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| |||||||| || |||| ||||||||||| || |||||||||||||| || || || Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 |||||||| || || || || || | ||| || || | ||| || |||||||| || Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||||||| Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | |||||||||||||||||| || ||||| ||||| || ||||| ||| Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || ||| | || ||||| | ||| || || || || || | Sbjct 907 TTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGA 966 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 967 GTCTTCACAAAGATCTGCATT 987 >seq48601 Length=1711 Score = 134 bits (148), Expect = 3e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | ||| ||||| || || |||||||||||||| |||||||| Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||| || || ||||| ||| || ||| ||||||||||| || ||||| || ||| Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 ||||| || || || ||||||||| Sbjct 904 AACGTTTTCACGAAGATCTGCATT 881 Score = 129 bits (142), Expect = 1e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| |||| ||| ||||| || || || || ||||| ||||||||||| Sbjct 540 TTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTTA 481 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || ||||| || || ||||| | || || ||||| |||||| Sbjct 480 GCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGTC 421 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 |||||||| || || ||||||||| Sbjct 420 AACGTCTTCACGAAGATCTGCATT 397 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | ||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct 1388 TTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTA 1329 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| || || || ||| ||||| | || || || || |||||| Sbjct 1328 GCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGTC 1269 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||||||| Sbjct 1268 AGTGTCTTCACAAAGATCTGCATT 1245 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 ||||||||||| || ||||| || ||||| || || ||||| || || ||||| || || Sbjct 1711 TGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCAATGGTGTCT 1652 Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||||||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 1651 GAAGCCTCAACTTCCAAGGTGATAGTCTTTCCAGTCAAAGTCTTCACGAAGATTTGCAT 1593 >seq75105 Length=1195 Score = 127 bits (140), Expect = 4e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| || |||||||| || || || |||||||| || || |||||||| ||||| ||||| Sbjct 740 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 681 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 |||||||||||| ||||| || || || || ||||| | ||| || ||||| || || Sbjct 680 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGT 621 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 || |||||| ||||| || |||||| Sbjct 620 CAGCGTCTTCACAAAGATTTGCATT 596 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| || ||||| || || || ||||||||||| ||||| || || Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || |||||||| || | ||| |||||||| || || ||||| || |||| Sbjct 372 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 313 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 312 GTCTTCACGAAGATTTGCATT 292 >seq150301 Length=587 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | || |||||||| || || ||||||||||| || ||||| |||||| Sbjct 515 CCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCT 456 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| ||||| | ||| || || | || |||||||| || || | | Sbjct 455 TTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGC 396 Query 82791 GTCTTTACAAATATCTGCAT 82810 || |||||||| |||||||| Sbjct 395 GTTTTTACAAAGATCTGCAT 376 >seq150799 Length=584 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| || |||||||| || || || |||||||| || || |||||||| ||||| ||||| Sbjct 129 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 70 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 |||||||||||| ||||| || || || || ||||| | || || ||||| || || Sbjct 69 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGGGTGATGGTCTTTCCAGT 10 Query 82787 CAACGTCTT 82795 || |||||| Sbjct 9 CAGCGTCTT 1 >seq133353 Length=689 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| || ||||| || || || ||||||||||| ||||| || || Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || |||||||| || | ||| |||||||| || || ||||| || |||| Sbjct 319 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 378 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 379 GTCTTCACGAAGATTTGCATT 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979722496918090