Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 178 3e-39
seq51722 178 3e-39
seq48601 134 3e-26
seq75105 127 4e-24
seq150301 118 2e-21
seq150799 107 4e-18
seq133353 105 1e-17
>seq54088
Length=1574
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | | ||| ||||| | ||| || || || || || || |||||||| || ||
Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 229
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | |||||| || ||||| |||||||||||||| |||| || ||||| |||||
Sbjct 230 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 289
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
||||| ||||||||||||||||| || || ||||| ||||| || || | ||||||
Sbjct 290 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 349
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| ||||||||||| || ||||| ||||| ||||| || ||||||
Sbjct 350 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397
Score = 96.9 bits (106), Expect = 7e-15
Identities = 109/145 (75%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
||| |||||||| || |||| ||||||||||| || ||||||||||| || || || ||
Sbjct 538 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 597
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|||||||| ||||| || || || | ||| || || | ||| || ||| |||| ||
Sbjct 598 GGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGT 657
Query 82787 CAACGTCTTTACAAATATCTGCATT 82811
| ||||| || || ||||||||
Sbjct 658 GAGAGTCTTAACGAA-GTCTGCATT 681
>seq51722
Length=1631
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | | ||| ||||| | ||| || || || || || || |||||||| || ||
Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 227
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | |||||| || ||||| |||||||||||||| |||| || ||||| |||||
Sbjct 228 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 287
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
||||| ||||||||||||||||| || || ||||| ||||| || || | ||||||
Sbjct 288 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 347
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| ||||||||||| || ||||| ||||| ||||| || ||||||
Sbjct 348 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||| || || |||| || || |||||||| ||||| |||||||||||||| |||
Sbjct 1143 TTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTTT 1202
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || ||||||||||| ||||| | ||| ||||| | || || || ||||| ||
Sbjct 1203 GCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGTG 1262
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| || ||||| ||||||
Sbjct 1263 AGAGTCTTGACGAATATTTGCATT 1286
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
||| |||||||| || |||| ||||||||||| || |||||||||||||| || || ||
Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|||||||| || || || || || | ||| || || | ||| || |||||||| ||
Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658
Query 82787 CAACGTCTTTACAAATATCTGCATT 82811
| ||||| || || |||||||||
Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || | |||||||||||||||||| || ||||| ||||| || ||||| |||
Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| || || ||||| || ||| | || ||||| | ||| || || || || || |
Sbjct 907 TTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGA 966
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| |||||||||
Sbjct 967 GTCTTCACAAAGATCTGCATT 987
>seq48601
Length=1711
Score = 134 bits (148), Expect = 3e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||| ||||| || || |||||||||||||| ||||||||
Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||| || || ||||| ||| || ||| ||||||||||| || ||||| || |||
Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
||||| || || || |||||||||
Sbjct 904 AACGTTTTCACGAAGATCTGCATT 881
Score = 129 bits (142), Expect = 1e-24
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || |||||||| |||| ||| ||||| || || || || ||||| |||||||||||
Sbjct 540 TTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTTA 481
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||||||| || ||||| || || ||||| | || || ||||| ||||||
Sbjct 480 GCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGTC 421
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
|||||||| || || |||||||||
Sbjct 420 AACGTCTTCACGAAGATCTGCATT 397
Score = 120 bits (132), Expect = 6e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||||||| || | ||| ||||| ||||| ||||||||||| ||||| |||||
Sbjct 1388 TTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTA 1329
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || ||||| ||||| || || || ||| ||||| | || || || || ||||||
Sbjct 1328 GCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGTC 1269
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| |||||||||
Sbjct 1268 AGTGTCTTCACAAAGATCTGCATT 1245
Score = 89.7 bits (98), Expect = 1e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751
||||||||||| || ||||| || ||||| || || ||||| || || ||||| || ||
Sbjct 1711 TGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCAATGGTGTCT 1652
Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || |||||||| || || ||||| || ||||| ||||| || || || |||||
Sbjct 1651 GAAGCCTCAACTTCCAAGGTGATAGTCTTTCCAGTCAAAGTCTTCACGAAGATTTGCAT 1593
>seq75105
Length=1195
Score = 127 bits (140), Expect = 4e-24
Identities = 115/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
||| || |||||||| || || || |||||||| || || |||||||| ||||| |||||
Sbjct 740 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 681
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|||||||||||| ||||| || || || || ||||| | ||| || ||||| || ||
Sbjct 680 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGT 621
Query 82787 CAACGTCTTTACAAATATCTGCATT 82811
|| |||||| ||||| || ||||||
Sbjct 620 CAGCGTCTTCACAAAGATTTGCATT 596
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||||| |||| || ||||| || || || ||||||||||| ||||| || ||
Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| || || |||||||| || | ||| |||||||| || || ||||| || ||||
Sbjct 372 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 313
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 312 GTCTTCACGAAGATTTGCATT 292
>seq150301
Length=587
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || |||||||| || || ||||||||||| || ||||| ||||||
Sbjct 515 CCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCT 456
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| ||||| | ||| || || | || |||||||| || || | |
Sbjct 455 TTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGC 396
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| |||||||| ||||||||
Sbjct 395 GTTTTTACAAAGATCTGCAT 376
>seq150799
Length=584
Score = 107 bits (118), Expect = 4e-18
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
||| || |||||||| || || || |||||||| || || |||||||| ||||| |||||
Sbjct 129 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 70
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|||||||||||| ||||| || || || || ||||| | || || ||||| || ||
Sbjct 69 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGGGTGATGGTCTTTCCAGT 10
Query 82787 CAACGTCTT 82795
|| ||||||
Sbjct 9 CAGCGTCTT 1
>seq133353
Length=689
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||||| |||| || ||||| || || || ||||||||||| ||||| || ||
Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| || || |||||||| || | ||| |||||||| || || ||||| || ||||
Sbjct 319 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 378
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 379 GTCTTCACGAAGATTTGCATT 399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 979722496918090
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