Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq150799 86.0 6e-12 seq48601 86.0 6e-12 seq75105 82.4 7e-11 >seq150799 Length=584 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || | |||||||||||| || |||||||||||||| |||||| Sbjct 444 CCGGCGAAGATAAGTCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 385 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| || || | | ||| || || | ||||| ||||| || |||| Sbjct 384 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 325 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| |||||||||||||| Sbjct 324 GTTTTCACGAAAATCTGCAT 305 >seq48601 Length=1711 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || || |||||||| || ||||||||||||||||| ||| || | Sbjct 241 CCGGCGAAGATAAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATTTTGGCC 182 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | ||||| | || || || || | ||||| ||| ||||| ||||| Sbjct 181 TTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGT 122 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| |||||||| ||||| Sbjct 121 GTTTTGACGAAAATTTGCAT 102 >seq75105 Length=1195 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || | ||| |||||||| || |||||||||||||| |||||| Sbjct 1055 CCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 996 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| || || | | ||| || || | ||||| ||||| || |||| Sbjct 995 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 936 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| |||||||||||||| Sbjct 935 GTTTTCACGAAAATCTGCAT 916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482409785824400