Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq54088 87.8 4e-12 seq51722 87.8 4e-12 >seq54088 Length=1574 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || ||||| ||||| || ||||||| || || ||||| | Sbjct 388 TTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTCGGACACTAT 329 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| ||||||||||| || || |||||| || || || |||| Sbjct 328 TGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCAGCAGCGACT 269 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || |||||||| | || || || | || ||| |||| || || |||| || Sbjct 268 GATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAATATCCAAAA 209 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || |||||||||||| | | ||||| Sbjct 208 GGAGTCAACGCTTCACCTTGTTCTTCGTCTTCG 176 >seq51722 Length=1631 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || ||||| ||||| || ||||||| || || ||||| | Sbjct 386 TTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTCGGACACTAT 327 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| ||||||||||| || || |||||| || || || |||| Sbjct 326 TGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCAGCAGCGACT 267 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || |||||||| | || || || | || ||| |||| || || |||| || Sbjct 266 GATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAATATCCAAAA 207 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || |||||||||||| | | ||||| Sbjct 206 GGAGTCAACGCTTCACCTTGTTCTTCGTCTTCG 174 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 206308 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 206367 ||||| || |||||||||| | ||| || ||||||||||| | ||||||||||| ||| Sbjct 1375 GGAAAACAACTGGAAGATGGCCGCACTCTGTCCGATTACAACATTCAGAAAGAGTCGACT 1316 Query 206368 CTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || |||||||| Sbjct 1315 CTTCATCTTGTATTAAGACTTCG 1293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179287378762510