Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1202 127 3e-23 seq23618 118 2e-20 seq1372 113 6e-19 seq12188 109 8e-18 seq38466 100 4e-15 seq7204 91.5 2e-12 >seq1202 Length=10981 Score = 127 bits (140), Expect = 3e-23 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| |||||||||||||||| |||||||| |||||| | |||| ||||||| ||||| Sbjct 10587 AAGGCCATGTCGATCATGAATTCGTTTGTGAACGACGTCTTCGAGCGCATCGCTGCCGAG 10646 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || || | || ||||||||| || || | | ||||| |||||||| Sbjct 10647 GCATCGCGACTCGCCCACTACAACAAGCGATCGACCATTTCCTCCCGCGAAATCCAGACT 10706 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || |||||| | | || ||||| |||| ||||||||| |||||||| |||| Sbjct 10707 GCTGTCCGTCTGATCCTTCCTGGAGAACTCGCCAAGCACGCCGTGTCCGAGGGAACCA 10764 >seq23618 Length=2847 Score = 118 bits (130), Expect = 2e-20 Identities = 133/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||||||||||||||| ||||| || |||||| | |||| ||||||| ||||| Sbjct 1 CCATGTCGATCATGAATTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTTGAGGC-- 58 Query 725029 GTCG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 ||| || || | || ||||||||| |||||| | | ||||| |||||||| || Sbjct 59 ATCGAAACTCGCACACTACAACAAGCGATCGACGATCTCCTCCCGCGAAATCCAGACTGC 118 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || |||||| | | ||| ||||| || | ||||||||| |||||||| |||| Sbjct 119 CGTCCGTCTGATCCTTCCCGGAGAACTCGCGAAGCACGCCGTGTCCGAGGGAACCA 174 >seq1372 Length=10555 Score = 113 bits (124), Expect = 6e-19 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||||||||| || || ||| |||| | | | ||||| ||| || Sbjct 359 ATCTACCGTGTGCTCAAGCAAGTCCATCCCGACACCG--GAGTC-TCCTC---GAAGGCC 412 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| ||||| || |||||| | |||| ||||||| |||||| | Sbjct 413 ATGTCAATCATGAATTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTCGAGGC--AT 470 Query 725031 CG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || || || | || ||||||||| |||||| | ||||| |||||||| || | Sbjct 471 CGAAACTTGCCCACTACAACAAGCGATCAACGATCTCTTCCCGCGAAATCCAGACTGCTG 530 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || ||||| | | || ||||| |||| ||||||||| |||||||| || Sbjct 531 TCCGTCTGATTCTTCCTGGAGAACTCGCCAAGCACGCCGTGTCCGAGGGAAC 582 >seq12188 Length=4179 Score = 109 bits (120), Expect = 8e-18 Identities = 132/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| |||||||||||||||| ||||| || |||||| | |||| || || | |||| Sbjct 3284 AAGGCCATGTCGATCATGAATTCGTTCGTGAACGACGTCTTCGAGCGAATTGCTGTCGAG 3225 Query 725025 GCCGGTCG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGA 725082 || ||| || || | || |||||| || |||||| | | ||||| ||||||| Sbjct 3224 GC--ATCGAAGCTCGCCCACTACAACAAACGATCGACGATCTCCTCCCGCGAAATCCAGA 3167 Query 725083 CCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| || |||||| | | || ||||| |||| ||||||||| |||||||| || Sbjct 3166 CTGCCGTCCGTCTGATCCTTCCTGGTGAACTCGCCAAGCACGCCGTGTCCGAGGGAAC 3109 >seq38466 Length=2041 Score = 100 bits (110), Expect = 4e-15 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||| || || || || ||| | |||| ||||||| |||||||| | Sbjct 1373 ATGTCGATCATGAATTCATTCGTGAATGACGTCTTCGAACGCATCGCTGCCGAGGCCTCT 1432 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | | || ||| | || ||||| ||||| || || Sbjct 1433 CGTCTTGCTCACTACAACAAGAGGACAACCATCTCTTCTCGTGAGATTCAGACTGCTGTT 1492 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| ||| || |||||||||| || || || ||||| ||||| Sbjct 1493 CGTCTGATTCTGCCAGGGGAACTGGCCAAACATGCTGTGTCCGAAGGCAC 1542 >seq7204 Length=5428 Score = 91.5 bits (100), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||||| | ||||| | Sbjct 974 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAACGCATCGCTGCTGAGGCATCT 915 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| ||| ||| | || || ||||| || || || Sbjct 914 CGTCTCGCCCACTACAACAAGCGGTCCACCATCTCTTCTCGTGAAATCCAAACTGCTGTT 855 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || ||| || || |||||| ||||| ||||| || || || Sbjct 854 CGACTAATTTTGCCTGGAGAGTTGGCCAAACACGCTGTCTCTGAAGGTAC 805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7161673842984220