Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1202 127 3e-23
seq23618 118 2e-20
seq1372 113 6e-19
seq12188 109 8e-18
seq38466 100 4e-15
seq7204 91.5 2e-12
>seq1202
Length=10981
Score = 127 bits (140), Expect = 3e-23
Identities = 135/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| |||||||||||||||| |||||||| |||||| | |||| ||||||| |||||
Sbjct 10587 AAGGCCATGTCGATCATGAATTCGTTTGTGAACGACGTCTTCGAGCGCATCGCTGCCGAG 10646
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084
|| || || || | || ||||||||| || || | | ||||| ||||||||
Sbjct 10647 GCATCGCGACTCGCCCACTACAACAAGCGATCGACCATTTCCTCCCGCGAAATCCAGACT 10706
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || || |||||| | | || ||||| |||| ||||||||| |||||||| ||||
Sbjct 10707 GCTGTCCGTCTGATCCTTCCTGGAGAACTCGCCAAGCACGCCGTGTCCGAGGGAACCA 10764
>seq23618
Length=2847
Score = 118 bits (130), Expect = 2e-20
Identities = 133/176 (76%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028
|||||||||||||||| ||||| || |||||| | |||| ||||||| |||||
Sbjct 1 CCATGTCGATCATGAATTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTTGAGGC-- 58
Query 725029 GTCG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086
||| || || | || ||||||||| |||||| | | ||||| |||||||| ||
Sbjct 59 ATCGAAACTCGCACACTACAACAAGCGATCGACGATCTCCTCCCGCGAAATCCAGACTGC 118
Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| || |||||| | | ||| ||||| || | ||||||||| |||||||| ||||
Sbjct 119 CGTCCGTCTGATCCTTCCCGGAGAACTCGCGAAGCACGCCGTGTCCGAGGGAACCA 174
>seq1372
Length=10555
Score = 113 bits (124), Expect = 6e-19
Identities = 167/232 (72%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||| ||||||||||| || || ||| |||| | | | ||||| ||| ||
Sbjct 359 ATCTACCGTGTGCTCAAGCAAGTCCATCCCGACACCG--GAGTC-TCCTC---GAAGGCC 412
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||| ||||| || |||||| | |||| ||||||| |||||| |
Sbjct 413 ATGTCAATCATGAATTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTCGAGGC--AT 470
Query 725031 CG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088
|| || || | || ||||||||| |||||| | ||||| |||||||| || |
Sbjct 471 CGAAACTTGCCCACTACAACAAGCGATCAACGATCTCTTCCCGCGAAATCCAGACTGCTG 530
Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
| || ||||| | | || ||||| |||| ||||||||| |||||||| ||
Sbjct 531 TCCGTCTGATTCTTCCTGGAGAACTCGCCAAGCACGCCGTGTCCGAGGGAAC 582
>seq12188
Length=4179
Score = 109 bits (120), Expect = 8e-18
Identities = 132/178 (74%), Gaps = 4/178 (2%)
Strand=Plus/Minus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| |||||||||||||||| ||||| || |||||| | |||| || || | ||||
Sbjct 3284 AAGGCCATGTCGATCATGAATTCGTTCGTGAACGACGTCTTCGAGCGAATTGCTGTCGAG 3225
Query 725025 GCCGGTCG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGA 725082
|| ||| || || | || |||||| || |||||| | | ||||| |||||||
Sbjct 3224 GC--ATCGAAGCTCGCCCACTACAACAAACGATCGACGATCTCCTCCCGCGAAATCCAGA 3167
Query 725083 CCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
| ||||| || |||||| | | || ||||| |||| ||||||||| |||||||| ||
Sbjct 3166 CTGCCGTCCGTCTGATCCTTCCTGGTGAACTCGCCAAGCACGCCGTGTCCGAGGGAAC 3109
>seq38466
Length=2041
Score = 100 bits (110), Expect = 4e-15
Identities = 124/170 (73%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||||||||| || || || || ||| | |||| ||||||| |||||||| |
Sbjct 1373 ATGTCGATCATGAATTCATTCGTGAATGACGTCTTCGAACGCATCGCTGCCGAGGCCTCT 1432
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || | || ||||||| | | || ||| | || ||||| ||||| || ||
Sbjct 1433 CGTCTTGCTCACTACAACAAGAGGACAACCATCTCTTCTCGTGAGATTCAGACTGCTGTT 1492
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| ||||| ||| || |||||||||| || || || ||||| |||||
Sbjct 1493 CGTCTGATTCTGCCAGGGGAACTGGCCAAACATGCTGTGTCCGAAGGCAC 1542
>seq7204
Length=5428
Score = 91.5 bits (100), Expect = 2e-12
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||||||||||||||| || |||||| | |||| ||||||| | ||||| |
Sbjct 974 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAACGCATCGCTGCTGAGGCATCT 915
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || | || ||||||||| ||| ||| | || || ||||| || || ||
Sbjct 914 CGTCTCGCCCACTACAACAAGCGGTCCACCATCTCTTCTCGTGAAATCCAAACTGCTGTT 855
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| || || ||| || || |||||| ||||| ||||| || || ||
Sbjct 854 CGACTAATTTTGCCTGGAGAGTTGGCCAAACACGCTGTCTCTGAAGGTAC 805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7161673842984220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |