Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq24732 118 1e-21
seq6785 84.2 3e-11
>seq24732
Length=2762
Score = 118 bits (130), Expect = 1e-21
Identities = 175/247 (71%), Gaps = 2/247 (1%)
Strand=Plus/Minus
Query 68617 GTATTTTG--AATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACA 68674
||||||| ||| |||||| || || || | |||||| || || |||| |||||
Sbjct 547 GTATTTTCGCAATAGATCCATGATTGGCAATCAGCTGATTCTTCATATCCTCATCCCACA 488
Query 68675 ATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATA 68734
| || ||| ||| || | || | ||| || ||||| ||||| || || ||||| |
Sbjct 487 AGTTCAACTCGACTAAGTCTTTCAGCAAATGTGGGTTAACAATTTGGAAGTCGCCAGACA 428
Query 68735 ACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAA 68794
||||||||| |||| || || || || || || | |||||||||||| || ||||
Sbjct 427 GTACTCTACGACTGTAGATGTTGAAAGTGTAAGGCTCAATAGATTCATTATTGCCAAGAA 368
Query 68795 TTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTG 68854
|||| || || || || |||||||| |||||||| | | ||| || | | |||||||
Sbjct 367 TTTGCGCCGTAGAAGCTGTTGGCATCGGTGCCACAAGAAGACTGTTGCGGACACCATGTC 308
Query 68855 TTATGAT 68861
| | |||
Sbjct 307 TAAAGAT 301
>seq6785
Length=5584
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748
|||| | ||||||| ||||||||| || ||||| || || | ||||||| ||||| |
Sbjct 5058 ACTCAAAGATATCAGCATGCCATGGCTCAAGATAGATGGCGAAAGCTCCCGGGCGTTTGT 4999
Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808
|||| || || || | || | ||||||||||| || || | ||||| || | | ||
Sbjct 4998 TTCCACCTTGGTCCACATAGCGTGCAGTGTTATTGTACACACGAAGCATAGGGACCAAAC 4939
Query 69809 CATTAGATTTACCATTTGT 69827
|||| || ||||||| ||
Sbjct 4938 CATTTGAAGTACCATTAGT 4920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685472216108400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |