Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq24732 118 1e-21 seq6785 84.2 3e-11 >seq24732 Length=2762 Score = 118 bits (130), Expect = 1e-21 Identities = 175/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 68617 GTATTTTG--AATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACA 68674 ||||||| ||| |||||| || || || | |||||| || || |||| ||||| Sbjct 547 GTATTTTCGCAATAGATCCATGATTGGCAATCAGCTGATTCTTCATATCCTCATCCCACA 488 Query 68675 ATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATA 68734 | || ||| ||| || | || | ||| || ||||| ||||| || || ||||| | Sbjct 487 AGTTCAACTCGACTAAGTCTTTCAGCAAATGTGGGTTAACAATTTGGAAGTCGCCAGACA 428 Query 68735 ACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAA 68794 ||||||||| |||| || || || || || || | |||||||||||| || |||| Sbjct 427 GTACTCTACGACTGTAGATGTTGAAAGTGTAAGGCTCAATAGATTCATTATTGCCAAGAA 368 Query 68795 TTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTG 68854 |||| || || || || |||||||| |||||||| | | ||| || | | ||||||| Sbjct 367 TTTGCGCCGTAGAAGCTGTTGGCATCGGTGCCACAAGAAGACTGTTGCGGACACCATGTC 308 Query 68855 TTATGAT 68861 | | ||| Sbjct 307 TAAAGAT 301 >seq6785 Length=5584 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | ||||||| ||||||||| || ||||| || || | ||||||| ||||| | Sbjct 5058 ACTCAAAGATATCAGCATGCCATGGCTCAAGATAGATGGCGAAAGCTCCCGGGCGTTTGT 4999 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 |||| || || || | || | ||||||||||| || || | ||||| || | | || Sbjct 4998 TTCCACCTTGGTCCACATAGCGTGCAGTGTTATTGTACACACGAAGCATAGGGACCAAAC 4939 Query 69809 CATTAGATTTACCATTTGT 69827 |||| || ||||||| || Sbjct 4938 CATTTGAAGTACCATTAGT 4920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685472216108400