Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq21886 286 1e-71
seq54088 181 3e-40
seq51722 181 3e-40
seq48601 138 3e-27
seq150301 127 6e-24
seq84433 122 3e-22
seq133353 120 9e-22
seq75105 120 9e-22
seq52966 104 7e-17
seq150799 96.9 1e-14
>seq21886
Length=2983
Score = 286 bits (316), Expect = 1e-71
Identities = 677/1014 (67%), Gaps = 14/1014 (1%)
Strand=Plus/Minus
Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666
|||||||| || ||||| || || || || ||||| | || ||| || || ||||||
Sbjct 1778 GATGCTGTCATCACTGTCCCTGCTTACTTCAATGACTCTCAACGTCAGGCTACCAAAGAT 1719
Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726
|| || ||| | || | |||||||| |||| || || ||||||||||| || ||
Sbjct 1718 GCCGGTGCCATCTCAGGAATGAATGTTCTTCGAATTATCAACGAACCCACTGCAGCTGCT 1659
Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaa--aaTATTCTTATTTTTGATT 349784
|| || || || || || || | || ||| | || | || | |||||||| |||
Sbjct 1658 ATCGCCTACGGTCTCGACAAGA--AGGGACAAGGAGAGCGCAACGTCCTTATTTTCGATC 1601
Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTA 349844
| || |||||||| || ||||| || | || || | || || |||||||| ||||| |
Sbjct 1600 TCGGAGGTGGTACCTTCGATGTCTCTATCCTGACTATCGAGGATGGAATTTTCGAAGTAA 1541
Query 349845 AAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGC 349904
| | |||||||||||||| |||||||| |||||||| ||||| || || | || |
Sbjct 1540 AGTCTACTGCTGGTGATACTCATCTTGGAGGAGAAGACTTTGACAACCGAATGGTCAACC 1481
Query 349905 ATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCA 349963
| ||||| ||||| || || ||||| || | ||| | ||| ||| | ||
Sbjct 1480 ACTTTGTCGCCGAATTCAAACG-CAAGCACAAGAAAGATCTCAACACTAACCCTCGTGCC 1422
Query 349964 ATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAA 350023
| ||||| || | || || || || ||||| |||||| || | || || | | ||
Sbjct 1421 CTCCGTCGTCTCCGCACCGCTTGCGAGCGTGCCAAGCGTACCCTCTCTTCGTCATCTCAG 1362
Query 350024 ACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGT 350083
| || |||||||| || || || ||| || | || |||| | || || |||
Sbjct 1361 GCTTCAATTGAAATCGACTCGCTGTTTGAGGGTATTGACTTCTACACTAACATCACTCGT 1302
Query 350084 GCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAA 350143
||||| |||||||| | || ||||| || | | || ||||| |||||||| ||
Sbjct 1301 GCTCGTTTTGAAGAGCTGTGCGCTGATCTCTTCCGTTCTACCATGGACCCTGTGGAGAA- 1243
Query 350144 GTAT-TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGG 350202
|| | | | ||||| |||||| ||| | |||||| |||| | || || || || ||
Sbjct 1242 GTCTCTGAGGGATGCTAAAATGGACAAGAGTCAGATCCATGATATTGTCTTGGTCGGAGG 1183
Query 350203 TTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACC 350262
||| || ||||| || || || ||| || | || || || |||| ||| || ||||
Sbjct 1182 TTCCACTCGTATCCCTAAGGTGCAAAAGCTCCTTTCGGATCTTTTCTCTGGAAAGGAACT 1123
Query 350263 TTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT 350322
| || || || || ||||||||||| || || ||||| ||||| || || ||||
Sbjct 1122 GAACAAGTCCATCAACCCCGATGAAGCTGTCGCCTACGGTGCGGCTGTGCAAGCTGCTAT 1063
Query 350323 TTTATCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCC 350379
| || || | ||| || || || | ||||| | || || ||||| ||||
Sbjct 1062 CCTTTCCGGTGACAAG---TCAGAAGCTGTGCAAGATCTCCTGCTTCTCGATGTTGCTCC 1006
Query 350380 ACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAG 350439
||||||||||| | || || | || | || ||||| | ||| || || || |
Sbjct 1005 TCTTTCGCTTGGTATCGAGACCGCCGGAGGTGTGATGACCGCTCTAATCAAGAGGAACAC 946
Query 350440 TACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGT 350499
|| | || || || | ||| || || | || | | | || || || || | ||
Sbjct 945 GACCATCCCCACCAAGACCAGCCAGACATTCACCACGTATTCCGACAACCAACCTGGCGT 886
Query 350500 AACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGA 350559
| || || || |||||||| || |||||| || || || || ||| |||||| |
Sbjct 885 ACTTATCCAGGTCTTTGAAGGAGAGCGTGCTATGACCAAGGACAACAATCTCCTTGGAAA 826
Query 350560 ATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613
||| || || |||||| ||| |||| | ||||| ||||| ||||| ||
Sbjct 825 GTTTGAGCTGTCTGGAATTCCGCCAGCGCCTCGTGGAGTACCTCAAATTGAGGT 772
Score = 132 bits (146), Expect = 1e-25
Identities = 362/551 (66%), Gaps = 10/551 (2%)
Strand=Plus/Plus
Query 183246 ATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT 183305
|| |||||||| ||||| ||||| || || ||||||||||| ||||| | || || | |
Sbjct 1063 ATAGCAGCTTGCACAGCCGCACCGTAGGCGACAGCTTCATCGGGGTTGA-TGGACTTGTT 1121
Query 183306 -AATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGA 183364
| ||| || ||| |||| || ||||| | | ||| | || || || | ||| ||
Sbjct 1122 CAGTTCCTTTCCAGAGAAAAGATCCGAAAGGAGCTTTTGCACCTTAGGGATACGAGTGGA 1181
Query 183365 ACCACCGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAAC 183424
||| ||||| || || | |||| ||| | ||| || |||| | ||| | | |
Sbjct 1182 ACCTCCGACCAAGACAATATCATGGATCTGACTCTTGTCCATTTTAGCATCCCTCAGAGA 1241
Query 183425 TTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGC 183484
|| || ||||||||||| || | || | ||| || | |||||| || | ||
Sbjct 1242 CTTCTCCACAGGGTCCATGGTAGAACGGAAGAGATCAGCGCACAGCTCTTCAAAACGAGC 1301
Query 183485 TCTAGTTAAAGATGaaa----aaaaGTCAATACCATTATATAAGGAATCAATTTCAATCG 183540
| ||| |||| | | ||||||||||| | | | | || || |||||||| |
Sbjct 1302 ACGAGT----GATGTTAGTGTAGAAGTCAATACCCTCAAACAGCGAGTCGATTTCAATTG 1357
Query 183541 ATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGAC 183600
| | || | || || || | || | || || || || || || || | || ||||
Sbjct 1358 AAGCCTGAGATGACGAAGAGAGGGTACGCTTGGCACGCTCGCAAGCGGTGCGGAGACGAC 1417
Query 183601 GTAATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAA 183660
| | | | || ||| | | ||||| || || || | ||| ||||| | | ||
Sbjct 1418 GGAGGGCACGAGGGTTAGTGTTGAGATCTTTCTTGTGCTTGCGTTTGAATTCGGCGACAA 1477
Query 183661 AATGTTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAG 183720
| || | | | || | ||||| ||||| || || | ||| ||||| ||||||||||
Sbjct 1478 AGTGGTTGACCATTCGGTTGTCAAAGTCTTCTCCTCCAAGATGAGTATCACCAGCAGTAG 1537
Query 183721 CTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCAC 183780
|| ||||| || ||||| || || ||| | | || || ||||| || |||||||| |
Sbjct 1538 ACTTTACTTCGAAAATTCCATCCTCGATAGTCAGGATAGAGACATCGAAGGTACCACCTC 1597
Query 183781 CCAAATCAAAA 183791
| | ||| |||
Sbjct 1598 CGAGATCGAAA 1608
>seq54088
Length=1574
Score = 181 bits (200), Expect = 3e-40
Identities = 168/213 (79%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|||||||| ||||| || ||||| ||||| |||||||| || || ||||| || || ||
Sbjct 185 AGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCC 244
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| ||||| |||||||||||||| || || |||||||||||||||||||| || |||||
Sbjct 245 TCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCT 304
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
||||| || || || ||||| ||||| | || || | || ||||| || || | |||
Sbjct 305 TGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTC 364
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
||||| || | || || |||||||| ||||||
Sbjct 365 TTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397
Score = 100 bits (110), Expect = 9e-16
Identities = 110/145 (76%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 140594 TTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTT 140653
||| |||||||| || || || || ||||| || ||||||||||| || ||||| |||||
Sbjct 538 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 597
Query 140654 AGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|||||||| || || || | || |||| |||||| || || |||| ||| | || ||
Sbjct 598 GGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGT 657
Query 140714 TAGTGTTTTTACAAAAATCTGCATT 140738
|| || || || || ||||||||
Sbjct 658 GAGAGTCTTAAC-GAAGTCTGCATT 681
>seq51722
Length=1631
Score = 181 bits (200), Expect = 3e-40
Identities = 168/213 (79%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|||||||| ||||| || ||||| ||||| |||||||| || || ||||| || || ||
Sbjct 183 AGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCC 242
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| ||||| |||||||||||||| || || |||||||||||||||||||| || |||||
Sbjct 243 TCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCT 302
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
||||| || || || ||||| ||||| | || || | || ||||| || || | |||
Sbjct 303 TGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTC 362
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
||||| || | || || |||||||| ||||||
Sbjct 363 TTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395
Score = 122 bits (134), Expect = 3e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| |||||||| | || ||||||||||||||||| || || |||||||| |||||||||
Sbjct 1490 CCGGCAAAGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCT 1549
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || || || | ||||||| ||| ||||| || || | ||||| ||||| ||
Sbjct 1550 TTGACGTTCTCTATTGTGTCAGATGCTTCGACTTCGAGCGTTATGGTCTTCCCGGTGAGA 1609
Query 140718 GTTTTTACAAAAATCTGCAT 140737
|| || || |||||||||||
Sbjct 1610 GTCTTGACGAAAATCTGCAT 1629
Score = 118 bits (130), Expect = 3e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 140594 TTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTT 140653
||| |||||||| || || || || ||||| || ||||||||||| |||||||| |||||
Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598
Query 140654 AGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|||||||| || || || | || |||| |||||| || || |||| ||||| || ||
Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658
Query 140714 TAGTGTTTTTACAAAAATCTGCATT 140738
|| || || || || |||||||||
Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683
Score = 114 bits (126), Expect = 4e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| ||||| || | | ||| ||||| |||||||| |||||||||||||| || || |||
Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||| | ||||||| |||||||| || || | ||| ||||| || ||
Sbjct 907 TTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGA 966
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || ||||| |||||||||
Sbjct 967 GTCTTCACAAAGATCTGCATT 987
Score = 100 bits (110), Expect = 9e-16
Identities = 86/105 (82%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554
|| ||||||| ||| |||||||| | ||||| |||||||||||||| |||||||| ||
Sbjct 1272 ACGAATATTTG-CATTCCACCACGAAGTCTTAATACAAGATGAAGAGTCGACTCTTTCTG 1330
Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCC 140599
||| || ||||| || | || || |||||||| |||||||||||
Sbjct 1331 AATGTTGTAATCGGACAGAGTGCGGCCATCTTCCAGTTGTTTTCC 1375
Score = 93.3 bits (102), Expect = 1e-13
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| |||||||| | || || || |||||||||||||||||||| || || || |||||
Sbjct 984 CATTCCACCACGAAGTCGAAGTACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATC 1043
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605
|| | ||| || ||||||||||| || ||||| |||||
Sbjct 1044 TGAGAGTGTGCGGCCATCTTCAAGCTGCTTTCCTGCAAA 1082
>seq48601
Length=1711
Score = 138 bits (152), Expect = 3e-27
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| ||||||||||| ||||||||||||||||||||||||||||| || || || || |||
Sbjct 1388 TTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTA 1329
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|| || ||||| ||||| | || || | ||| ||||| || |||| ||| || || ||
Sbjct 1328 GCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGTC 1269
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
||||| || ||||| |||||||||
Sbjct 1268 AGTGTCTTCACAAAGATCTGCATT 1245
Score = 134 bits (148), Expect = 4e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || ||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct 1024 TTACCAGCAAAAATCAGACGTTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTA 965
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|| ||||| || || |||| ||||| | ||||||||| | || | |||||||| ||
Sbjct 964 GCCTTTACGTTCTCGATCGTGTCAGAAGCTTCAACTTCCAAAGTGATGGTCTTTCCAGTC 905
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
| ||||| || || |||||||||
Sbjct 904 AACGTTTTCACGAAGATCTGCATT 881
Score = 116 bits (128), Expect = 1e-20
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| || |||||||| || |||||||||||||| ||||| || || || || ||||| |||
Sbjct 540 TTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTTA 481
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
||||||||||| || || | ||| || | || ||||| ||||| | |||||||| ||
Sbjct 480 GCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGTC 421
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
| || || || || |||||||||
Sbjct 420 AACGTCTTCACGAAGATCTGCATT 397
>seq150301
Length=587
Score = 127 bits (140), Expect = 6e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | || || |||||||| || |||||||| || ||||||||||| |||
Sbjct 515 CCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCT 456
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | ||| || | ||| || ||||| || | |||||||| || ||
Sbjct 455 TTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGC 396
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||||||||| ||||||||
Sbjct 395 GTTTTTACAAAGATCTGCAT 376
>seq84433
Length=1073
Score = 122 bits (134), Expect = 3e-22
Identities = 252/373 (68%), Gaps = 4/373 (1%)
Strand=Plus/Plus
Query 349516 ACAA-AAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAA 349574
|||| ||||| || ||||||||||||||| | |||||| | | || ||||||||||
Sbjct 419 ACAAGAAACAGTTCACACCCGAAGAAATTTCGGCTATGGTTCTCGGAAAGATGAAGGAAA 478
Query 349575 TTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATT 349634
|||| || | ||| | || | ||| | | ||||| | ||||| || ||||| |
Sbjct 479 TTGCCGAGTCCTATCTTGGAAAGGAAGTGAAACACGCTGTAGTAACTGTTCCTGCCTACT 538
Query 349635 TTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTC 349694
| || |||||||| ||| || || || || || || | ||| || || | ||||||
Sbjct 539 TCAACGATGCCCAACGTCAAGCCACCAAGGACGCCGGAACCATCGCTGGACTTAATGTTG 598
Query 349695 TAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTG 349754
|| |||| || || || || ||||| || || || || || || ||||| || || |
Sbjct 599 TACGAATTATCAACGAGCCAACTGCAGCCGCTATCGCCTACGGTCTTGACAA---GAAGG 655
Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814
| ||| || || || | || || || || |||||||| |||||||| || | |
Sbjct 656 AAGGAGAGCGCAACATCCTCGTATTCGACTTGGGAGGTGGTACCTTTGATGTGTCTATGC 715
Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874
| || | || | || | || ||||| || ||| || || || || | || |
Sbjct 716 TTACCATCGACAACGGTGTATTCGAAGTATTGGCCACTAACGGAGACACCCACTTGGGAG 775
Query 349875 GAGAAGATTTTGA 349887
| |||||||||||
Sbjct 776 GTGAAGATTTTGA 788
>seq133353
Length=689
Score = 120 bits (132), Expect = 9e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| ||
Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||||| || || | ||||||||| | || | ||||||||| || ||
Sbjct 319 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 378
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || || ||||||
Sbjct 379 GTCTTCACGAAGATTTGCATT 399
>seq75105
Length=1195
Score = 120 bits (132), Expect = 9e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| ||
Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||||| || || | ||||||||| | || | ||||||||| || ||
Sbjct 372 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 313
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || || ||||||
Sbjct 312 GTCTTCACGAAGATTTGCATT 292
Score = 104 bits (114), Expect = 7e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 140594 TTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTT 140653
||| || |||||||| || | |||||||| || ||||| ||||| || || || || ||
Sbjct 740 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 681
Query 140654 AGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
||||||||||| ||||| | || || | || |||||||| || | |||||||| ||
Sbjct 680 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGT 621
Query 140714 TAGTGTTTTTACAAAAATCTGCATT 140738
|| || || ||||| || ||||||
Sbjct 620 CAGCGTCTTCACAAAGATTTGCATT 596
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| || | || || || || ||||| ||||| || ||||| || || |||
Sbjct 1055 CCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 996
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||| | ||||| || | || | ||| || || || | |
Sbjct 995 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 936
Query 140718 GTTTTTACAAAAATCTGCATT 140738
||||| || ||||||||||||
Sbjct 935 GTTTTCACGAAAATCTGCATT 915
>seq52966
Length=1601
Score = 104 bits (114), Expect = 7e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||| ||||| ||||||||||| || |||||||| || ||||| || || || |||||
Sbjct 1123 CCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCC 1064
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| || || | || || | || || || || |||| ||||| || || ||
Sbjct 1063 TTCACATTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGA 1004
Query 140718 GTTTTTACAAAAATCTGCATTA 140739
||||| ||||| || |||||||
Sbjct 1003 GTTTTCACAAAGATTTGCATTA 982
>seq150799
Length=584
Score = 96.9 bits (106), Expect = 1e-14
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| || | ||||| || || ||||| ||||| || ||||| || || |||
Sbjct 444 CCGGCGAAGATAAGTCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 385
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||| | ||||| || | || | ||| || || || | |
Sbjct 384 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 325
Query 140718 GTTTTTACAAAAATCTGCATT 140738
||||| || ||||||||||||
Sbjct 324 GTTTTCACGAAAATCTGCATT 304
Score = 89.7 bits (98), Expect = 2e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 140594 TTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTT 140653
||| || |||||||| || | |||||||| || ||||| ||||| || || || || ||
Sbjct 129 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 70
Query 140654 AGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
||||||||||| ||||| | || || | || |||||||| || | |||||||| ||
Sbjct 69 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGGGTGATGGTCTTTCCAGT 10
Query 140714 TAGTGTTTT 140722
|| || ||
Sbjct 9 CAGCGTCTT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1512006210699930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |