Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 181 1e-40
seq51722 181 1e-40
seq52966 134 2e-26
seq150301 120 3e-22
seq48601 118 1e-21
seq75105 107 2e-18
seq133353 100 3e-16
seq150799 86.0 7e-12
>seq54088
Length=1574
Score = 181 bits (200), Expect = 1e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||||||||| | || || ||||| || || || || || ||| |
Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| ||||||| || ||||| || ||||||||||||||||| || ||
Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 278
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || || |||||||| |||||||||||||| | |||||| | | ||||||||
Sbjct 277 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 218
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||||| || || ||||| || || | |||||||| || ||
Sbjct 217 TATCCAAAAGGAGTCAACGCTTCACCTTGTTCTTCGTCTTCGTGGAGG 170
Score = 116 bits (128), Expect = 4e-21
Identities = 113/144 (78%), Gaps = 1/144 (1%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| | ||| || ||||| || || |||| |||||||||||| |||||||| ||
Sbjct 681 AATGCAGA-CTTCGTTAAGACTCTCACTGGCAGGACTATTACTCTCGAGGTTGAAGCATC 623
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | ||| | || || ||||| ||||||||||| |||||||| ||||| ||
Sbjct 622 CGACACAATCGAAAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCACCAGATCA 563
Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548
||||| || ||||||||||||||
Sbjct 562 ACAGCGACTGATTTTTGCTGGTAA 539
>seq51722
Length=1631
Score = 181 bits (200), Expect = 1e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||||||||| | || || ||||| || || || || || ||| |
Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| ||||||| || ||||| || ||||||||||||||||| || ||
Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 276
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || || |||||||| |||||||||||||| | |||||| | | ||||||||
Sbjct 275 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 216
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||||| || || ||||| || || | |||||||| || ||
Sbjct 215 TATCCAAAAGGAGTCAACGCTTCACCTTGTTCTTCGTCTTCGTGGAGG 168
Score = 140 bits (154), Expect = 4e-28
Identities = 118/145 (81%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || |||||||| || || ||||| || ||||| ||||| || || ||
Sbjct 1286 AATGCAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATC 1227
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| |||| |||| | ||||| |||||||| || ||||||||||| |||||||||||
Sbjct 1226 GGATACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCA 1167
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
|||||| || ||||| |||||||||
Sbjct 1166 GCAGCGACTTATTTTCGCTGGTAAG 1142
Score = 120 bits (132), Expect = 3e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || ||||| || || ||||||||||||||||| |||||||| ||
Sbjct 683 AATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATC 624
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | || | || || ||||| ||||| ||||| |||||||| ||||| ||
Sbjct 623 CGACACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCA 564
Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548
||||| || ||||||||||||||
Sbjct 563 ACAGCGACTGATTTTTGCTGGTAA 540
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| ||||| || || || || ||||| || |||||| ||
Sbjct 987 AATGCAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATC 928
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | |||| || | || || || || ||||| || || || ||||||||||| ||
Sbjct 927 TGACACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCA 868
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
|| | | |||||||| ||| ||
Sbjct 867 ACAAAGATTGATTTTTGCAGGTTAG 843
>seq52966
Length=1601
Score = 134 bits (148), Expect = 2e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463
|||||||||||||||| || || ||||| || ||||||||||| || ||||| ||| |
Sbjct 982 TAATGCAAATCTTTGTGAAAACTCTTACGGGGAAGACTATTACCCTCGAGGTCGAGGCTT 1041
Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|| | || | |||| |||||||||| || || ||||| ||||| |||||||||||||
Sbjct 1042 CGGACACTATAGAAAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACC 1101
Query 27524 AGCAGCGTCTAATTTTTGCTGGTA 27547
|||| ||||| || || |||||||
Sbjct 1102 AGCAACGTCTTATCTTCGCTGGTA 1125
>seq150301
Length=587
Score = 120 bits (132), Expect = 3e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || |||||||| || ||||| || || |||||||| || |
Sbjct 376 ATGCAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTCG 435
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| |||| || ||||||||||||||||| ||||| || || || ||
Sbjct 436 GATACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAA 495
Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549
||||| | |||||||||||| ||
Sbjct 496 CAGCGATTGATTTTTGCTGGTTAG 519
>seq48601
Length=1711
Score = 118 bits (130), Expect = 1e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || || || || || ||||| || || || || |
Sbjct 1245 AATGCAGATCTTTGTGAAGACACTGACAGGGAAAACAATTACCCTCGAAGTCGAAGCTTC 1304
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| |||||||||| || || |||||||| ||||||||||| || ||
Sbjct 1305 GGACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCA 1364
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||| ||||| || ||||||||||||
Sbjct 1365 GCAACGTCTCATCTTTGCTGGTAAG 1389
Score = 104 bits (114), Expect = 3e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || |||||| | || || |||||||| || || || || ||| |
Sbjct 397 AATGCAGATCTTCGTGAAGACGTTGACAGGAAAGACTATCACACTCGAAGTCGAGGCTTC 456
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| || | |||| | || ||||| ||||| ||||||||||| ||||| || || ||
Sbjct 457 AGATACAATCGAAAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCACCTGATCA 516
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||| || || || ||||| ||||||
Sbjct 517 GCAACGACTTATCTTTGCCGGTAAG 541
Score = 100 bits (110), Expect = 3e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || || ||| | || || ||||| || ||| | || ||||| |
Sbjct 881 AATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACCATCACTTTGGAAGTTGAAGCTTC 940
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | || | |||||||| |||||||| ||||| ||||| || || || ||
Sbjct 941 TGACACGATCGAGAACGTAAAGGCTAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCA 1000
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||| ||||| |||||||||||||||
Sbjct 1001 GCAACGTCTGATTTTTGCTGGTAAG 1025
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || ||||| || || || |||||||| || || || ||||| || |
Sbjct 101 AATGCAAATTTTCGTCAAAACACTGACTGGCAAGACCATCACCCTGGAGGTCGAAGCCTC 160
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | ||| | ||||| ||||| ||||||||||| || || || ||||||||
Sbjct 161 AGACACCATCGAAAACGTAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCGCCAGACCA 220
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553
||| || || || || || ||| || |||
Sbjct 221 GCAACGCCTTATCTTCGCCGGTGAGTAAC 249
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| || |||||||| |||| |||||| || || || || ||| |||| ||||| || |||
Sbjct 308 GGCAAACAACTCGAAGATGGTCGTACTCTTGCGGATTACAATATCCAGAAGGAGTCTACT 367
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
||||||||||| | |||||||| || |||
Sbjct 368 CTTCATCTAGTACTTCGTCTTCGAGGAGGA 397
>seq75105
Length=1195
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| |||||||| || || ||||| || |||||||| || ||| |
Sbjct 596 AATGCAAATCTTTGTGAAGACGCTGACTGGAAAGACCATCACTCTTGAAGTGGAGGCTTC 655
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| | || || || || || |||||||| || ||||| ||||| ||
Sbjct 656 GGACACTATTGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGGATTCCACCAGATCA 715
Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548
|||| | || || ||||| |||||
Sbjct 716 GCAGAGGCTCATCTTTGCCGGTAA 739
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || || || ||||| || || | || ||||| |
Sbjct 292 AATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTC 351
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| || ||||||| ||||||||||| ||||| || ||||| || || ||
Sbjct 352 CGACACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCA 411
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|||||| || || ||||||||| || ||
Sbjct 412 GCAGCGACTTATCTTTGCTGGTGAGTAA 439
Score = 82.4 bits (90), Expect = 9e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || || || || | || || || || || || | ||||||||| |
Sbjct 915 AATGCAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTC 974
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||||| ||| |||| || || || ||||||||||| || ||||| || |||||
Sbjct 975 TGATACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 1034
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||| | || || || || ||| ||
Sbjct 1035 ACAGAGACTTATCTTCGCCGGTTAG 1059
>seq133353
Length=689
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || || || ||||| || || | || ||||| |
Sbjct 399 AATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTC 340
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| || ||||||| ||||||||||| ||||| || ||||| || || ||
Sbjct 339 CGACACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCA 280
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|||||| || || ||||||||| || ||
Sbjct 279 GCAGCGACTTATCTTTGCTGGTGAGTAA 252
>seq150799
Length=584
Score = 86.0 bits (94), Expect = 7e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || || || || | || || || || || || | ||||||||| |
Sbjct 304 AATGCAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTC 363
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||||| ||| |||| || || || ||||||||||| || ||||| || |||||
Sbjct 364 TGATACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 423
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
|||| | || || || || ||| ||
Sbjct 424 GCAGAGACTTATCTTCGCCGGTTAG 448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569117667087200
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