Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq54088 181 1e-40 seq51722 181 1e-40 seq52966 134 2e-26 seq150301 120 3e-22 seq48601 118 1e-21 seq75105 107 2e-18 seq133353 100 3e-16 seq150799 86.0 7e-12 >seq54088 Length=1574 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||||||||| | || || ||||| || || || || || ||| | Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| ||||||| || ||||| || ||||||||||||||||| || || Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 278 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || |||||||| |||||||||||||| | |||||| | | |||||||| Sbjct 277 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 218 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||| || || ||||| || || | |||||||| || || Sbjct 217 TATCCAAAAGGAGTCAACGCTTCACCTTGTTCTTCGTCTTCGTGGAGG 170 Score = 116 bits (128), Expect = 4e-21 Identities = 113/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| | ||| || ||||| || || |||| |||||||||||| |||||||| || Sbjct 681 AATGCAGA-CTTCGTTAAGACTCTCACTGGCAGGACTATTACTCTCGAGGTTGAAGCATC 623 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | || || ||||| ||||||||||| |||||||| ||||| || Sbjct 622 CGACACAATCGAAAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCACCAGATCA 563 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| || |||||||||||||| Sbjct 562 ACAGCGACTGATTTTTGCTGGTAA 539 >seq51722 Length=1631 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||||||||| | || || ||||| || || || || || ||| | Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| ||||||| || ||||| || ||||||||||||||||| || || Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 276 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || |||||||| |||||||||||||| | |||||| | | |||||||| Sbjct 275 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 216 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||| || || ||||| || || | |||||||| || || Sbjct 215 TATCCAAAAGGAGTCAACGCTTCACCTTGTTCTTCGTCTTCGTGGAGG 168 Score = 140 bits (154), Expect = 4e-28 Identities = 118/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| || || ||||| || ||||| ||||| || || || Sbjct 1286 AATGCAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATC 1227 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | ||||| |||||||| || ||||||||||| ||||||||||| Sbjct 1226 GGATACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCA 1167 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| || ||||| ||||||||| Sbjct 1166 GCAGCGACTTATTTTCGCTGGTAAG 1142 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || ||||||||||||||||| |||||||| || Sbjct 683 AATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATC 624 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | || || ||||| ||||| ||||| |||||||| ||||| || Sbjct 623 CGACACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCA 564 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| || |||||||||||||| Sbjct 563 ACAGCGACTGATTTTTGCTGGTAA 540 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || || || || ||||| || |||||| || Sbjct 987 AATGCAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATC 928 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| || | || || || || ||||| || || || ||||||||||| || Sbjct 927 TGACACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCA 868 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 || | | |||||||| ||| || Sbjct 867 ACAAAGATTGATTTTTGCAGGTTAG 843 >seq52966 Length=1601 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 |||||||||||||||| || || ||||| || ||||||||||| || ||||| ||| | Sbjct 982 TAATGCAAATCTTTGTGAAAACTCTTACGGGGAAGACTATTACCCTCGAGGTCGAGGCTT 1041 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | |||| |||||||||| || || ||||| ||||| ||||||||||||| Sbjct 1042 CGGACACTATAGAAAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACC 1101 Query 27524 AGCAGCGTCTAATTTTTGCTGGTA 27547 |||| ||||| || || ||||||| Sbjct 1102 AGCAACGTCTTATCTTCGCTGGTA 1125 >seq150301 Length=587 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || |||||||| || ||||| || || |||||||| || | Sbjct 376 ATGCAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTCG 435 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| |||| || ||||||||||||||||| ||||| || || || || Sbjct 436 GATACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAA 495 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| | |||||||||||| || Sbjct 496 CAGCGATTGATTTTTGCTGGTTAG 519 >seq48601 Length=1711 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || || || ||||| || || || || | Sbjct 1245 AATGCAGATCTTTGTGAAGACACTGACAGGGAAAACAATTACCCTCGAAGTCGAAGCTTC 1304 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| |||||||||| || || |||||||| ||||||||||| || || Sbjct 1305 GGACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCA 1364 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| ||||| || |||||||||||| Sbjct 1365 GCAACGTCTCATCTTTGCTGGTAAG 1389 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||| | || || |||||||| || || || || ||| | Sbjct 397 AATGCAGATCTTCGTGAAGACGTTGACAGGAAAGACTATCACACTCGAAGTCGAGGCTTC 456 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | |||| | || ||||| ||||| ||||||||||| ||||| || || || Sbjct 457 AGATACAATCGAAAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCACCTGATCA 516 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| || || || ||||| |||||| Sbjct 517 GCAACGACTTATCTTTGCCGGTAAG 541 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || ||| | || || ||||| || ||| | || ||||| | Sbjct 881 AATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACCATCACTTTGGAAGTTGAAGCTTC 940 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || | |||||||| |||||||| ||||| ||||| || || || || Sbjct 941 TGACACGATCGAGAACGTAAAGGCTAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCA 1000 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| ||||| ||||||||||||||| Sbjct 1001 GCAACGTCTGATTTTTGCTGGTAAG 1025 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || ||||| || || || |||||||| || || || ||||| || | Sbjct 101 AATGCAAATTTTCGTCAAAACACTGACTGGCAAGACCATCACCCTGGAGGTCGAAGCCTC 160 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||||| ||||| ||||||||||| || || || |||||||| Sbjct 161 AGACACCATCGAAAACGTAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCGCCAGACCA 220 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 ||| || || || || || ||| || ||| Sbjct 221 GCAACGCCTTATCTTCGCCGGTGAGTAAC 249 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || || |||||||| |||| |||||| || || || || ||| |||| ||||| || ||| Sbjct 308 GGCAAACAACTCGAAGATGGTCGTACTCTTGCGGATTACAATATCCAGAAGGAGTCTACT 367 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||| | |||||||| || ||| Sbjct 368 CTTCATCTAGTACTTCGTCTTCGAGGAGGA 397 >seq75105 Length=1195 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| |||||||| || || ||||| || |||||||| || ||| | Sbjct 596 AATGCAAATCTTTGTGAAGACGCTGACTGGAAAGACCATCACTCTTGAAGTGGAGGCTTC 655 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | || || || || || |||||||| || ||||| ||||| || Sbjct 656 GGACACTATTGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGGATTCCACCAGATCA 715 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 |||| | || || ||||| ||||| Sbjct 716 GCAGAGGCTCATCTTTGCCGGTAA 739 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || ||||| || || | || ||||| | Sbjct 292 AATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTC 351 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| ||||||||||| ||||| || ||||| || || || Sbjct 352 CGACACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCA 411 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||| || || ||||||||| || || Sbjct 412 GCAGCGACTTATCTTTGCTGGTGAGTAA 439 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || | || || || || || || | ||||||||| | Sbjct 915 AATGCAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTC 974 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 975 TGATACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 1034 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || || ||| || Sbjct 1035 ACAGAGACTTATCTTCGCCGGTTAG 1059 >seq133353 Length=689 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || ||||| || || | || ||||| | Sbjct 399 AATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTC 340 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| ||||||||||| ||||| || ||||| || || || Sbjct 339 CGACACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCA 280 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||| || || ||||||||| || || Sbjct 279 GCAGCGACTTATCTTTGCTGGTGAGTAA 252 >seq150799 Length=584 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || | || || || || || || | ||||||||| | Sbjct 304 AATGCAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTC 363 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 364 TGATACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 423 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||| | || || || || ||| || Sbjct 424 GCAGAGACTTATCTTCGCCGGTTAG 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569117667087200